Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF550 and GFF551 are separated by 49 nucleotides GFF551 and GFF552 are separated by 97 nucleotides GFF552 and GFF553 overlap by 1 nucleotides
GFF550 - C4-type zinc finger protein, DksA/TraR family, at 218,238 to 219,362
GFF550
GFF551 - FIG00931886: hypothetical protein, at 219,412 to 221,289
GFF551
GFF552 - ATP-dependent protease HslV (EC 3.4.25.-), at 221,387 to 221,932
GFF552
GFF553 - ATP-dependent hsl protease ATP-binding subunit HslU, at 221,932 to 223,266
GFF553
Position (kb) 219
220
221
222 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 218.861 kb on + strand, within GFF550 at 218.862 kb on - strand, within GFF550 at 218.997 kb on + strand, within GFF550 at 218.998 kb on - strand, within GFF550 at 219.237 kb on + strand, within GFF550 at 219.237 kb on + strand, within GFF550 at 219.526 kb on + strand at 219.527 kb on - strand at 219.907 kb on + strand, within GFF551 at 219.908 kb on - strand, within GFF551 at 219.993 kb on + strand, within GFF551 at 219.994 kb on - strand, within GFF551 at 220.172 kb on + strand, within GFF551 at 220.172 kb on - strand, within GFF551 at 220.172 kb on - strand, within GFF551 at 220.339 kb on + strand, within GFF551 at 220.340 kb on - strand, within GFF551 at 220.424 kb on - strand, within GFF551 at 220.424 kb on - strand, within GFF551 at 220.424 kb on - strand, within GFF551 at 220.424 kb on - strand, within GFF551 at 220.465 kb on + strand, within GFF551 at 220.465 kb on + strand, within GFF551 at 220.465 kb on + strand, within GFF551 at 220.465 kb on + strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.834 kb on + strand, within GFF551 at 220.834 kb on + strand, within GFF551 at 220.834 kb on + strand, within GFF551 at 220.834 kb on + strand, within GFF551 at 220.835 kb on - strand, within GFF551 at 220.835 kb on - strand, within GFF551 at 220.873 kb on + strand, within GFF551 at 220.873 kb on + strand, within GFF551 at 220.873 kb on + strand, within GFF551 at 220.873 kb on + strand, within GFF551 at 220.874 kb on - strand, within GFF551 at 220.874 kb on - strand, within GFF551 at 220.874 kb on - strand, within GFF551 at 220.876 kb on + strand, within GFF551 at 220.876 kb on + strand, within GFF551 at 220.876 kb on + strand, within GFF551 at 220.877 kb on - strand, within GFF551 at 220.877 kb on - strand, within GFF551 at 220.877 kb on - strand, within GFF551 at 220.877 kb on - strand, within GFF551 at 221.261 kb on - strand at 221.261 kb on - strand at 221.320 kb on + strand at 221.320 kb on + strand at 221.320 kb on + strand at 221.798 kb on + strand, within GFF552 at 221.799 kb on - strand, within GFF552 at 221.799 kb on - strand, within GFF552 at 221.897 kb on + strand at 221.897 kb on + strand at 221.897 kb on + strand at 221.897 kb on + strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 222.202 kb on + strand, within GFF553 at 222.202 kb on + strand, within GFF553 at 222.202 kb on + strand, within GFF553 at 222.203 kb on - strand, within GFF553 at 222.203 kb on - strand, within GFF553
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 218,861 + GFF550 0.55 -0.6 218,862 - GFF550 0.55 -0.7 218,997 + GFF550 0.67 +2.8 218,998 - GFF550 0.68 +2.0 219,237 + GFF550 0.89 +1.4 219,237 + GFF550 0.89 +1.2 219,526 + +1.4 219,527 - -1.5 219,907 + GFF551 0.26 +0.3 219,908 - GFF551 0.26 +0.9 219,993 + GFF551 0.31 +0.4 219,994 - GFF551 0.31 +0.1 220,172 + GFF551 0.40 +0.7 220,172 - GFF551 0.40 -0.2 220,172 - GFF551 0.40 +0.5 220,339 + GFF551 0.49 -0.4 220,340 - GFF551 0.49 -0.6 220,424 - GFF551 0.54 +0.8 220,424 - GFF551 0.54 +1.1 220,424 - GFF551 0.54 +1.6 220,424 - GFF551 0.54 -0.1 220,465 + GFF551 0.56 -0.1 220,465 + GFF551 0.56 -0.1 220,465 + GFF551 0.56 +0.4 220,465 + GFF551 0.56 +0.6 220,466 - GFF551 0.56 -1.1 220,466 - GFF551 0.56 -1.8 220,466 - GFF551 0.56 +0.5 220,466 - GFF551 0.56 +0.4 220,466 - GFF551 0.56 +1.4 220,466 - GFF551 0.56 -1.2 220,466 - GFF551 0.56 +0.6 220,466 - GFF551 0.56 -1.2 220,834 + GFF551 0.76 -0.4 220,834 + GFF551 0.76 +0.7 220,834 + GFF551 0.76 +0.6 220,834 + GFF551 0.76 +1.0 220,835 - GFF551 0.76 +0.2 220,835 - GFF551 0.76 +0.8 220,873 + GFF551 0.78 +0.5 220,873 + GFF551 0.78 -0.5 220,873 + GFF551 0.78 +0.4 220,873 + GFF551 0.78 +0.6 220,874 - GFF551 0.78 +0.5 220,874 - GFF551 0.78 -0.4 220,874 - GFF551 0.78 +0.8 220,876 + GFF551 0.78 +0.1 220,876 + GFF551 0.78 -0.1 220,876 + GFF551 0.78 +0.9 220,877 - GFF551 0.78 +1.2 220,877 - GFF551 0.78 +0.8 220,877 - GFF551 0.78 -0.5 220,877 - GFF551 0.78 +1.4 221,261 - -0.2 221,261 - +0.2 221,320 + -0.2 221,320 + -0.2 221,320 + -0.5 221,798 + GFF552 0.75 -0.6 221,799 - GFF552 0.75 -0.8 221,799 - GFF552 0.75 -0.3 221,897 + +0.7 221,897 + +0.6 221,897 + -0.3 221,897 + +0.4 221,898 - -0.3 221,898 - -0.4 221,898 - +0.9 221,898 - -1.8 221,898 - +0.6 221,898 - -0.3 221,898 - -1.2 222,202 + GFF553 0.20 -1.0 222,202 + GFF553 0.20 -0.6 222,202 + GFF553 0.20 -0.5 222,203 - GFF553 0.20 +0.2 222,203 - GFF553 0.20 +0.4
Or see this region's nucleotide sequence