Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5462

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
2,463,776	-				-0.3
2,464,192	+		GFF5461	0.52	+0.1
2,464,192	+		GFF5461	0.52	+0.3
2,464,193	-		GFF5461	0.52	-0.4
2,464,193	-		GFF5461	0.52	-0.7
2,464,671	+				+1.4
2,464,672	-				-0.1
2,464,672	-				-1.6
2,464,672	-				-0.9
2,464,672	-				-0.5
2,464,672	-				-1.9
2,464,797	+		GFF5462	0.17	+0.1
2,464,797	+		GFF5462	0.17	+0.7
2,464,798	-		GFF5462	0.17	+0.3
2,464,798	-		GFF5462	0.17	+1.3
2,464,798	-		GFF5462	0.17	+0.3
2,464,849	-		GFF5462	0.22	-0.7
2,464,851	+		GFF5462	0.22	-2.0
2,464,852	-		GFF5462	0.23	+0.7
2,464,852	-		GFF5462	0.23	-1.4
2,464,852	-		GFF5462	0.23	-2.2
2,464,852	-		GFF5462	0.23	-0.5
2,464,852	-		GFF5462	0.23	-1.4
2,464,852	-		GFF5462	0.23	-0.3
2,465,139	+		GFF5462	0.52	-0.2
2,465,140	-		GFF5462	0.52	-0.1
2,465,145	+		GFF5462	0.53	-1.8
2,465,146	-		GFF5462	0.53	-1.2
2,465,146	-		GFF5462	0.53	-0.9
2,465,188	-		GFF5462	0.57	-0.2
2,465,277	+		GFF5462	0.66	-1.0
2,465,277	+		GFF5462	0.66	-0.5
2,465,278	-		GFF5462	0.66	+0.9
2,465,527	-				-0.2
2,465,615	+				+2.3
2,465,615	+				-1.6
2,465,615	+				+0.7
2,465,615	+				-0.7
2,465,615	+				-1.1
2,465,616	-				+0.4
2,465,616	-				-0.9
2,465,727	+				+0.4
2,465,727	+				+1.1
2,465,727	+				+1.3
2,465,727	+				-1.6
2,465,728	-				-0.8
2,465,728	-				-1.9
2,465,728	-				-0.1
2,465,728	-				-0.9
2,465,728	-				-1.1
2,465,728	-				-0.9
2,465,731	+				-1.1
2,465,731	+				+3.1
2,465,732	-				-1.9
2,465,732	-				-0.5
2,465,732	-				-0.5
2,465,732	-				+0.8
2,465,732	-				+0.1
2,465,735	+				-1.4
2,465,736	-				-0.3
2,465,738	+				+1.3
2,465,766	+				-0.1
2,465,767	-				-1.2
2,465,767	-				-1.3
2,465,830	-				-0.8
2,465,892	+		GFF5463	0.15	-1.4
2,465,892	+		GFF5463	0.15	-1.2
2,465,893	-		GFF5463	0.15	+1.3
2,465,893	-		GFF5463	0.15	-0.5
2,465,893	-		GFF5463	0.15	-0.1
2,465,895	+		GFF5463	0.15	-0.5
2,465,895	+		GFF5463	0.15	+2.1
2,465,895	+		GFF5463	0.15	+0.3
2,465,895	+		GFF5463	0.15	+1.2
2,465,895	+		GFF5463	0.15	-0.3
2,465,896	-		GFF5463	0.15	+1.3
2,465,896	-		GFF5463	0.15	-0.8
2,465,896	-		GFF5463	0.15	+0.5
2,466,015	+		GFF5463	0.28	-0.3
2,466,016	-		GFF5463	0.28	+0.2
2,466,570	+		GFF5463	0.88	-0.6
2,466,571	-		GFF5463	0.88	+0.9
2,466,595	-				+0.1
2,466,606	+				+1.0
2,466,606	+				+0.3
2,466,606	+				-0.9
2,466,606	+				-1.4
2,466,606	+				-0.9
2,466,606	+				+0.9
2,466,606	+				+0.2
2,466,606	+				-1.0
2,466,607	-				-1.1
2,466,607	-				-0.1
2,466,607	-				+3.8
2,466,607	-				-0.9