Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5382

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
2,383,082	-				+3.0
2,383,082	-				-0.5
2,383,139	-				+0.3
2,383,139	-				+1.6
2,383,139	-				+0.3
2,383,198	+		GFF5381	0.19	+0.7
2,383,198	+		GFF5381	0.19	-0.7
2,383,198	+		GFF5381	0.19	-0.3
2,383,463	-		GFF5381	0.77	-0.0
2,383,728	+				-1.0
2,383,728	+				-0.3
2,383,729	-				-0.3
2,383,757	+				+0.2
2,383,757	+				+1.0
2,383,757	+				-0.7
2,383,758	-				+0.5
2,383,758	-				+0.1
2,383,758	-				-0.3
2,383,848	+		GFF5382	0.10	+0.1
2,383,849	-		GFF5382	0.10	+0.0
2,383,863	-		GFF5382	0.12	+0.6
2,384,129	+		GFF5382	0.40	+0.3
2,384,129	+		GFF5382	0.40	+0.4
2,384,129	+		GFF5382	0.40	+0.7
2,384,129	+		GFF5382	0.40	-0.4
2,384,129	+		GFF5382	0.40	+0.2
2,384,130	-		GFF5382	0.41	+0.2
2,384,130	-		GFF5382	0.41	+1.8
2,384,130	-		GFF5382	0.41	-1.1
2,384,130	-		GFF5382	0.41	+1.6
2,384,130	-		GFF5382	0.41	+0.1
2,384,130	-		GFF5382	0.41	-0.6
2,384,130	-		GFF5382	0.41	+2.7
2,384,177	+		GFF5382	0.46	+0.0
2,384,177	+		GFF5382	0.46	+0.4
2,384,177	+		GFF5382	0.46	+0.7
2,384,177	+		GFF5382	0.46	+1.2
2,384,177	+		GFF5382	0.46	+0.4
2,384,177	+		GFF5382	0.46	+0.5
2,384,178	-		GFF5382	0.46	-0.3
2,384,178	-		GFF5382	0.46	+1.0
2,384,178	-		GFF5382	0.46	-0.7
2,384,178	-		GFF5382	0.46	+0.6
2,384,462	+		GFF5382	0.77	-0.7
2,384,463	-		GFF5382	0.77	+0.7
2,384,747	+				+0.4
2,384,748	-				+0.7
2,384,748	-				-1.4
2,384,751	-				-0.4
2,384,751	-				+0.3
2,384,769	+				-0.4
2,384,770	-				-0.1
2,384,841	-				-2.7
2,384,841	-				+0.9
2,384,885	-				-0.5
2,384,908	+				+0.5
2,385,080	+				-0.2
2,385,115	+		GFF5383	0.12	-0.9
2,385,115	+		GFF5383	0.12	-0.9
2,385,116	-		GFF5383	0.12	+0.5
2,385,129	+		GFF5383	0.13	-0.1
2,385,130	-		GFF5383	0.13	-1.7
2,385,130	-		GFF5383	0.13	-0.2
2,385,216	+		GFF5383	0.18	+1.1
2,385,216	+		GFF5383	0.18	+0.4
2,385,216	+		GFF5383	0.18	+0.9
2,385,217	-		GFF5383	0.18	-0.8
2,385,558	+		GFF5383	0.39	+1.3
2,385,558	+		GFF5383	0.39	-1.0
2,385,656	+		GFF5383	0.46	+0.8
2,385,660	+		GFF5383	0.46	-0.1
2,385,660	+		GFF5383	0.46	-0.6
2,385,661	-		GFF5383	0.46	+3.5