Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5374

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
2,375,522	-		GFF5373	0.59	+0.5
2,375,522	-		GFF5373	0.59	-0.3
2,375,965	+		GFF5373	0.77	-0.5
2,375,981	-		GFF5373	0.78	-0.2
2,375,981	-		GFF5373	0.78	-0.8
2,376,226	+		GFF5373	0.88	-0.8
2,376,226	+		GFF5373	0.88	+1.3
2,376,227	-		GFF5373	0.88	+1.0
2,376,271	+				+0.1
2,376,272	-				+0.6
2,376,525	+				+1.3
2,376,526	-				-0.5
2,376,526	-				+0.1
2,376,963	+		GFF5374	0.56	-0.4
2,376,963	+		GFF5374	0.56	-1.2
2,376,964	-		GFF5374	0.56	-0.9
2,377,033	-		GFF5374	0.65	+0.7
2,377,205	-		GFF5374	0.86	+0.0
2,377,377	-				+1.9
2,377,407	+				-1.6
2,377,407	+				+0.0
2,377,408	-				+0.5
2,377,408	-				+1.6
2,377,408	-				-0.1
2,377,769	+		GFF5375	0.50	-0.7
2,377,770	-		GFF5375	0.50	+0.1
2,377,770	-		GFF5375	0.50	+1.9
2,377,781	+		GFF5375	0.52	-0.3
2,377,896	-		GFF5375	0.64	-0.1