Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF530 and GFF531 are separated by 112 nucleotides GFF531 and GFF532 are separated by 32 nucleotides GFF532 and GFF533 are separated by 185 nucleotides GFF533 and GFF534 are separated by 41 nucleotides
GFF530 - NAD(FAD)-utilizing dehydrogenase, sll0175 homolog, at 197,952 to 199,775
GFF530
GFF531 - hypothetical protein, at 199,888 to 200,478
GFF531
GFF532 - Na+ driven multidrug efflux pump, at 200,511 to 201,866
GFF532
GFF533 - hypothetical protein, at 202,052 to 202,282
GFF533
GFF534 - LysR-family transcriptional regulator, at 202,324 to 203,310
GFF534
Position (kb) 200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 199.543 kb on + strand, within GFF530 at 199.543 kb on + strand, within GFF530 at 199.543 kb on + strand, within GFF530 at 199.544 kb on - strand, within GFF530 at 199.544 kb on - strand, within GFF530 at 199.544 kb on - strand, within GFF530 at 199.544 kb on - strand, within GFF530 at 199.821 kb on - strand at 199.821 kb on - strand at 199.955 kb on - strand, within GFF531 at 199.955 kb on - strand, within GFF531 at 200.063 kb on - strand, within GFF531 at 200.121 kb on - strand, within GFF531 at 200.121 kb on - strand, within GFF531 at 200.121 kb on - strand, within GFF531 at 200.121 kb on - strand, within GFF531 at 200.121 kb on - strand, within GFF531 at 200.908 kb on - strand, within GFF532 at 201.342 kb on + strand, within GFF532 at 201.342 kb on + strand, within GFF532 at 201.343 kb on - strand, within GFF532 at 201.369 kb on + strand, within GFF532 at 201.369 kb on + strand, within GFF532 at 201.369 kb on + strand, within GFF532 at 201.369 kb on + strand, within GFF532 at 201.369 kb on + strand, within GFF532 at 201.370 kb on - strand, within GFF532 at 201.370 kb on - strand, within GFF532 at 201.370 kb on - strand, within GFF532 at 201.370 kb on - strand, within GFF532 at 201.522 kb on + strand, within GFF532 at 201.732 kb on + strand at 201.732 kb on + strand at 201.789 kb on + strand at 201.790 kb on - strand at 201.790 kb on - strand at 201.790 kb on - strand at 201.820 kb on - strand at 201.820 kb on - strand at 201.820 kb on - strand at 201.823 kb on - strand at 202.241 kb on - strand, within GFF533 at 202.241 kb on - strand, within GFF533 at 202.379 kb on + strand at 202.379 kb on + strand at 202.380 kb on - strand at 202.380 kb on - strand at 202.631 kb on + strand, within GFF534 at 202.631 kb on + strand, within GFF534 at 202.817 kb on + strand, within GFF534 at 202.818 kb on - strand, within GFF534 at 202.818 kb on - strand, within GFF534 at 202.818 kb on - strand, within GFF534 at 202.818 kb on - strand, within GFF534 at 202.862 kb on + strand, within GFF534 at 202.862 kb on + strand, within GFF534 at 202.863 kb on - strand, within GFF534 at 202.863 kb on - strand, within GFF534
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 199,543 + GFF530 0.87 -0.5 199,543 + GFF530 0.87 -1.2 199,543 + GFF530 0.87 -0.4 199,544 - GFF530 0.87 -0.5 199,544 - GFF530 0.87 +0.8 199,544 - GFF530 0.87 -2.2 199,544 - GFF530 0.87 -3.1 199,821 - +0.5 199,821 - -0.2 199,955 - GFF531 0.11 -0.4 199,955 - GFF531 0.11 -0.9 200,063 - GFF531 0.30 -0.8 200,121 - GFF531 0.39 -0.0 200,121 - GFF531 0.39 -0.9 200,121 - GFF531 0.39 -0.4 200,121 - GFF531 0.39 -0.7 200,121 - GFF531 0.39 -0.8 200,908 - GFF532 0.29 +1.0 201,342 + GFF532 0.61 -0.4 201,342 + GFF532 0.61 +0.2 201,343 - GFF532 0.61 -0.0 201,369 + GFF532 0.63 +1.8 201,369 + GFF532 0.63 -1.6 201,369 + GFF532 0.63 +2.0 201,369 + GFF532 0.63 -0.0 201,369 + GFF532 0.63 -0.1 201,370 - GFF532 0.63 +0.7 201,370 - GFF532 0.63 -0.4 201,370 - GFF532 0.63 +1.4 201,370 - GFF532 0.63 +0.6 201,522 + GFF532 0.75 +0.1 201,732 + -1.8 201,732 + +0.6 201,789 + -1.8 201,790 - -0.3 201,790 - -0.8 201,790 - -0.2 201,820 - +0.1 201,820 - -1.0 201,820 - +0.8 201,823 - -0.5 202,241 - GFF533 0.82 -0.5 202,241 - GFF533 0.82 -0.0 202,379 + -1.0 202,379 + -0.0 202,380 - -0.0 202,380 - -1.3 202,631 + GFF534 0.31 +0.9 202,631 + GFF534 0.31 -0.0 202,817 + GFF534 0.50 -0.2 202,818 - GFF534 0.50 -0.7 202,818 - GFF534 0.50 +1.1 202,818 - GFF534 0.50 -0.0 202,818 - GFF534 0.50 +1.7 202,862 + GFF534 0.55 +1.1 202,862 + GFF534 0.55 -0.3 202,863 - GFF534 0.55 -0.2 202,863 - GFF534 0.55 -0.2
Or see this region's nucleotide sequence