Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF525

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF523 and GFF524 are separated by 5 nucleotidesGFF524 and GFF525 overlap by 4 nucleotidesGFF525 and GFF526 are separated by 78 nucleotides GFF523 - Dihydroorotase (EC 3.5.2.3), at 190,461 to 191,507 GFF523 GFF524 - probable putative transmembrane protein, at 191,513 to 192,268 GFF524 GFF525 - glutamine synthetase family protein, at 192,265 to 193,650 GFF525 GFF526 - Heat shock protease, at 193,729 to 194,607 GFF526 Position (kb) 192 193 194Strain fitness (log2 ratio) -2 -1 0 1 2 3at 191.295 kb on + strand, within GFF523at 191.295 kb on + strand, within GFF523at 191.295 kb on + strand, within GFF523at 191.296 kb on - strand, within GFF523at 191.296 kb on - strand, within GFF523at 191.296 kb on - strand, within GFF523at 191.370 kb on + strand, within GFF523at 191.371 kb on - strand, within GFF523at 191.679 kb on - strand, within GFF524at 191.679 kb on - strand, within GFF524at 191.679 kb on - strand, within GFF524at 191.679 kb on - strand, within GFF524at 192.023 kb on + strand, within GFF524at 192.024 kb on - strand, within GFF524at 192.206 kb on + strandat 192.209 kb on + strandat 192.209 kb on + strandat 192.210 kb on - strandat 192.210 kb on - strandat 192.210 kb on - strandat 192.493 kb on + strand, within GFF525at 192.494 kb on - strand, within GFF525at 192.499 kb on + strand, within GFF525at 192.500 kb on - strand, within GFF525at 192.500 kb on - strand, within GFF525at 192.592 kb on - strand, within GFF525at 192.680 kb on - strand, within GFF525at 192.727 kb on + strand, within GFF525at 192.727 kb on + strand, within GFF525at 192.928 kb on + strand, within GFF525at 192.929 kb on - strand, within GFF525at 192.929 kb on - strand, within GFF525at 192.929 kb on - strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.162 kb on + strand, within GFF525at 193.163 kb on - strand, within GFF525at 193.163 kb on - strand, within GFF525at 193.163 kb on - strand, within GFF525at 193.163 kb on - strand, within GFF525at 193.163 kb on - strand, within GFF525at 193.207 kb on + strand, within GFF525at 193.208 kb on - strand, within GFF525at 193.208 kb on - strand, within GFF525at 193.208 kb on - strand, within GFF525at 193.228 kb on + strand, within GFF525at 193.229 kb on - strand, within GFF525at 193.373 kb on - strand, within GFF525at 193.459 kb on + strand, within GFF525at 193.459 kb on + strand, within GFF525at 193.460 kb on - strand, within GFF525at 193.564 kb on + strandat 193.565 kb on - strandat 193.565 kb on - strandat 193.688 kb on + strandat 193.688 kb on + strandat 193.688 kb on + strandat 193.688 kb on + strandat 193.688 kb on + strandat 193.688 kb on + strandat 193.688 kb on + strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.689 kb on - strandat 193.708 kb on + strandat 193.712 kb on + strandat 193.712 kb on + strandat 194.317 kb on + strand, within GFF526at 194.317 kb on + strand, within GFF526at 194.317 kb on + strand, within GFF526at 194.317 kb on + strand, within GFF526at 194.317 kb on + strand, within GFF526at 194.317 kb on + strand, within GFF526at 194.318 kb on - strand, within GFF526at 194.321 kb on - strand, within GFF526at 194.635 kb on + strandat 194.635 kb on + strandat 194.635 kb on + strandat 194.635 kb on + strandat 194.636 kb on - strandat 194.636 kb on - strandat 194.636 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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191,295 + GFF523 0.80 +0.6
191,295 + GFF523 0.80 +0.8
191,295 + GFF523 0.80 +0.4
191,296 - GFF523 0.80 +0.4
191,296 - GFF523 0.80 +1.2
191,296 - GFF523 0.80 -1.2
191,370 + GFF523 0.87 +0.4
191,371 - GFF523 0.87 +0.4
191,679 - GFF524 0.22 -0.0
191,679 - GFF524 0.22 -1.6
191,679 - GFF524 0.22 -0.4
191,679 - GFF524 0.22 -1.8
192,023 + GFF524 0.67 +0.8
192,024 - GFF524 0.68 -1.2
192,206 + +0.2
192,209 + +0.2
192,209 + -0.5
192,210 - +0.8
192,210 - -0.7
192,210 - +2.0
192,493 + GFF525 0.16 +2.0
192,494 - GFF525 0.17 -0.6
192,499 + GFF525 0.17 +0.7
192,500 - GFF525 0.17 -0.6
192,500 - GFF525 0.17 +0.9
192,592 - GFF525 0.24 +0.7
192,680 - GFF525 0.30 +1.0
192,727 + GFF525 0.33 +0.8
192,727 + GFF525 0.33 +0.2
192,928 + GFF525 0.48 +2.2
192,929 - GFF525 0.48 +2.5
192,929 - GFF525 0.48 +1.1
192,929 - GFF525 0.48 -0.1
193,162 + GFF525 0.65 +1.5
193,162 + GFF525 0.65 -0.8
193,162 + GFF525 0.65 +2.1
193,162 + GFF525 0.65 +1.1
193,162 + GFF525 0.65 +0.5
193,162 + GFF525 0.65 +0.6
193,162 + GFF525 0.65 +1.6
193,163 - GFF525 0.65 +3.2
193,163 - GFF525 0.65 -0.2
193,163 - GFF525 0.65 +0.5
193,163 - GFF525 0.65 +2.0
193,163 - GFF525 0.65 +1.2
193,207 + GFF525 0.68 +0.7
193,208 - GFF525 0.68 -0.4
193,208 - GFF525 0.68 +0.6
193,208 - GFF525 0.68 +0.6
193,228 + GFF525 0.69 +1.5
193,229 - GFF525 0.70 +0.3
193,373 - GFF525 0.80 +0.0
193,459 + GFF525 0.86 +0.6
193,459 + GFF525 0.86 +0.6
193,460 - GFF525 0.86 -0.4
193,564 + +0.3
193,565 - -0.9
193,565 - +1.8
193,688 + +0.3
193,688 + +0.4
193,688 + -1.1
193,688 + +0.4
193,688 + +0.2
193,688 + -1.2
193,688 + +1.0
193,689 - -1.6
193,689 - -0.4
193,689 - -0.1
193,689 - +1.4
193,689 - +0.0
193,689 - -0.4
193,689 - -0.3
193,689 - -0.2
193,689 - -2.0
193,689 - -0.3
193,689 - +1.0
193,708 + -0.5
193,712 + +0.4
193,712 + -1.0
194,317 + GFF526 0.67 +2.8
194,317 + GFF526 0.67 +0.3
194,317 + GFF526 0.67 +3.1
194,317 + GFF526 0.67 -1.0
194,317 + GFF526 0.67 -0.5
194,317 + GFF526 0.67 +0.3
194,318 - GFF526 0.67 +0.9
194,321 - GFF526 0.67 +0.9
194,635 + +0.7
194,635 + -0.4
194,635 + +0.3
194,635 + +2.8
194,636 - +0.4
194,636 - -0.1
194,636 - -1.2

Or see this region's nucleotide sequence