Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5208

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
2,222,254	+				-0.7
2,222,255	-				-1.3
2,222,255	-				-1.3
2,222,536	+		GFF5207	0.36	-0.1
2,222,536	+		GFF5207	0.36	+1.1
2,222,605	+		GFF5207	0.45	+1.7
2,222,605	+		GFF5207	0.45	-0.5
2,222,605	+		GFF5207	0.45	+1.2
2,222,605	+		GFF5207	0.45	-0.9
2,222,605	+		GFF5207	0.45	+0.8
2,222,605	+		GFF5207	0.45	-1.2
2,222,606	-		GFF5207	0.45	+1.0
2,223,028	+				-0.0
2,223,028	+				-0.1
2,223,028	+				-1.0
2,223,028	+				+0.9
2,223,029	-				-0.7
2,223,050	+				+0.5
2,223,051	-				-0.0
2,223,051	-				+0.0
2,223,051	-				-0.4
2,223,132	+				-0.0
2,223,133	-				+0.1
2,223,133	-				+0.1
2,223,225	+				+0.3
2,223,225	+				-0.4
2,223,225	+				+0.7
2,223,225	+				+1.0
2,223,226	-				-0.1
2,223,255	+				-0.1
2,223,255	+				+1.4
2,223,256	-				-0.3
2,223,280	-				+0.7
2,223,280	-				+0.0
2,223,591	+		GFF5208	0.22	+0.3
2,223,591	+		GFF5208	0.22	-0.2
2,223,591	+		GFF5208	0.22	-0.6
2,223,592	-		GFF5208	0.22	-0.2
2,223,592	-		GFF5208	0.22	-0.1
2,223,592	-		GFF5208	0.22	+0.2
2,223,592	-		GFF5208	0.22	+0.1
2,223,690	+		GFF5208	0.27	-0.9
2,223,690	+		GFF5208	0.27	+0.1
2,223,691	-		GFF5208	0.27	+0.3
2,223,798	+		GFF5208	0.34	+0.3
2,223,798	+		GFF5208	0.34	+0.1
2,223,798	+		GFF5208	0.34	+0.8
2,223,799	-		GFF5208	0.34	+0.8
2,223,888	+		GFF5208	0.39	+0.3
2,223,889	-		GFF5208	0.39	-1.5
2,223,987	+		GFF5208	0.45	-0.3
2,223,987	+		GFF5208	0.45	+1.8
2,223,988	-		GFF5208	0.45	-0.0
2,223,988	-		GFF5208	0.45	-0.3
2,223,988	-		GFF5208	0.45	-0.3
2,224,005	+		GFF5208	0.46	+2.2
2,224,056	+		GFF5208	0.49	+0.5
2,224,056	+		GFF5208	0.49	-1.4
2,224,057	-		GFF5208	0.49	+1.0
2,224,057	-		GFF5208	0.49	-1.5
2,224,545	+		GFF5208	0.78	+1.6
2,224,719	+		GFF5208	0.88	-1.3
2,224,720	-		GFF5208	0.88	+0.2
2,224,899	+				+0.4
2,224,932	+		GFF5209	0.17	-0.3
2,224,958	-		GFF5209	0.37	-0.0
2,225,036	+				+1.4
2,225,078	+				+0.4
2,225,081	-				-0.3
2,225,196	-				-0.4
2,225,196	-				+0.5
2,225,210	+				-0.3
2,225,210	+				-0.4
2,225,210	+				+0.5
2,225,210	+				+0.8
2,225,210	+				-0.2
2,225,210	+				+0.4
2,225,210	+				-0.3
2,225,210	+				+0.7
2,225,211	-				+1.9
2,225,211	-				-1.2
2,225,211	-				+0.2
2,225,211	-				+0.6
2,225,211	-				+1.8
2,225,211	-				-0.6
2,225,211	-				+1.0
2,225,211	-				+0.5
2,225,394	-		GFF5210	0.13	-0.8
2,225,489	+		GFF5210	0.19	+0.3
2,225,489	+		GFF5210	0.19	-1.1
2,225,489	+		GFF5210	0.19	-0.3
2,225,489	+		GFF5210	0.19	-0.1
2,225,498	+		GFF5210	0.20	-0.1
2,225,499	-		GFF5210	0.20	-0.3
2,225,645	+		GFF5210	0.29	-0.3
2,225,645	+		GFF5210	0.29	+1.6
2,225,646	-		GFF5210	0.29	+1.1
2,225,751	-		GFF5210	0.35	-0.9
2,225,751	-		GFF5210	0.35	+0.1
2,225,856	-		GFF5210	0.41	+0.3
2,225,876	+		GFF5210	0.43	+0.7
2,225,876	+		GFF5210	0.43	-0.2