Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5204

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
2,218,748	+		GFF5202	0.29	-1.3
2,218,922	+		GFF5202	0.57	+0.2
2,218,923	-		GFF5202	0.57	+0.0
2,219,141	+				-1.1
2,219,142	-				-0.4
2,219,142	-				-1.7
2,219,215	+				+0.7
2,219,215	+				-0.2
2,219,216	-				+0.7
2,219,431	+		GFF5203	0.49	+0.5
2,219,432	-		GFF5203	0.49	+0.3
2,219,432	-		GFF5203	0.49	-0.1
2,219,432	-		GFF5203	0.49	-0.9
2,219,432	-		GFF5203	0.49	+0.6
2,219,432	-		GFF5203	0.49	-0.5
2,219,464	+		GFF5203	0.60	-0.1
2,219,465	-		GFF5203	0.60	+0.3
2,219,465	-		GFF5203	0.60	-0.7
2,219,497	+		GFF5203	0.71	+0.2
2,219,497	+		GFF5203	0.71	-0.2
2,219,498	-		GFF5203	0.71	-0.7
2,219,554	+		GFF5203	0.89	+1.3
2,219,584	+				-0.3
2,219,648	+				+1.3
2,219,648	+				-0.0
2,219,648	+				+0.4
2,219,961	-		GFF5204	0.30	+1.2
2,219,961	-		GFF5204	0.30	+0.2
2,219,993	+		GFF5204	0.32	+1.0
2,219,993	+		GFF5204	0.32	+1.3
2,219,993	+		GFF5204	0.32	-0.3
2,219,994	-		GFF5204	0.33	+0.1
2,220,110	+		GFF5204	0.42	+0.4
2,220,110	+		GFF5204	0.42	-0.6
2,220,339	-		GFF5204	0.61	+0.4
2,220,339	-		GFF5204	0.61	+1.9
2,220,339	-		GFF5204	0.61	+0.4
2,220,449	+		GFF5204	0.70	-0.1
2,220,449	+		GFF5204	0.70	-0.0
2,220,449	+		GFF5204	0.70	+0.3
2,220,449	+		GFF5204	0.70	-0.8
2,220,449	+		GFF5204	0.70	-0.7
2,220,450	-		GFF5204	0.70	-1.3
2,220,450	-		GFF5204	0.70	+1.3
2,220,450	-		GFF5204	0.70	+3.5
2,220,450	-		GFF5204	0.70	+0.6
2,220,569	+		GFF5204	0.80	-1.0
2,220,569	+		GFF5204	0.80	+0.8
2,220,569	+		GFF5204	0.80	+0.2
2,220,570	-		GFF5204	0.80	+1.7
2,220,570	-		GFF5204	0.80	+0.2
2,220,570	-		GFF5204	0.80	-0.3
2,220,966	+		GFF5205	0.22	-0.1
2,220,966	+		GFF5205	0.22	-0.5
2,220,966	+		GFF5205	0.22	-0.2
2,221,041	+		GFF5205	0.40	-0.3
2,221,041	+		GFF5205	0.40	-0.7
2,221,041	+		GFF5205	0.40	+0.3
2,221,041	+		GFF5205	0.40	+3.2
2,221,041	+		GFF5205	0.40	-0.2
2,221,041	+		GFF5205	0.40	+0.3
2,221,041	+		GFF5205	0.40	-0.1
2,221,042	-		GFF5205	0.40	-0.7
2,221,042	-		GFF5205	0.40	+1.1
2,221,042	-		GFF5205	0.40	-1.0
2,221,182	+		GFF5205	0.73	+4.6
2,221,191	+		GFF5205	0.75	+1.3
2,221,332	+				+0.0
2,221,332	+				-0.2
2,221,405	+		GFF5206	0.11	-0.5
2,221,405	+		GFF5206	0.11	-0.3
2,221,406	-		GFF5206	0.11	-1.0
2,221,406	-		GFF5206	0.11	+2.0
2,221,406	-		GFF5206	0.11	-0.3