Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5098

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
2,113,535	-				-0.3
2,113,600	+				-1.1
2,113,600	+				-0.9
2,113,600	+				+0.2
2,113,600	+				-0.4
2,113,601	-				-0.9
2,113,601	-				-1.4
2,113,615	+				-0.3
2,113,615	+				-1.3
2,113,615	+				-0.8
2,113,615	+				-0.3
2,113,615	+				-0.9
2,113,616	-				-0.4
2,113,751	-		GFF5097	0.15	-0.9
2,113,861	+		GFF5097	0.27	-1.7
2,113,861	+		GFF5097	0.27	-0.7
2,113,861	+		GFF5097	0.27	-0.3
2,113,861	+		GFF5097	0.27	-0.4
2,113,862	-		GFF5097	0.27	-1.6
2,114,066	-		GFF5097	0.49	-1.3
2,114,401	+		GFF5097	0.86	+0.5
2,114,401	+		GFF5097	0.86	-0.2
2,114,402	-		GFF5097	0.87	-0.5
2,114,402	-		GFF5097	0.87	-0.8
2,114,402	-		GFF5097	0.87	-1.8
2,114,402	-		GFF5097	0.87	-0.3
2,114,407	+		GFF5097	0.87	-1.3
2,114,407	+		GFF5097	0.87	-1.0
2,114,583	+				-0.4
2,114,583	+				-1.6
2,114,886	+		GFF5098	0.40	-0.2
2,114,886	+		GFF5098	0.40	-0.8
2,114,886	+		GFF5098	0.40	+3.5
2,114,887	-		GFF5098	0.40	-1.5
2,114,887	-		GFF5098	0.40	+0.7
2,114,887	-		GFF5098	0.40	-0.7
2,115,138	+		GFF5098	0.67	-1.6
2,115,138	+		GFF5098	0.67	+0.1
2,115,252	+		GFF5098	0.80	-1.0
2,115,252	+		GFF5098	0.80	-1.1
2,115,252	+		GFF5098	0.80	-2.8
2,115,253	-		GFF5098	0.80	-0.7
2,115,253	-		GFF5098	0.80	-1.1
2,115,261	+		GFF5098	0.81	-0.7
2,115,261	+		GFF5098	0.81	-1.6
2,115,262	-		GFF5098	0.81	-0.7
2,115,680	+		GFF5099	0.23	-1.5
2,115,680	+		GFF5099	0.23	+0.2
2,116,133	+		GFF5099	0.64	-0.5
2,116,133	+		GFF5099	0.64	-0.6
2,116,134	-		GFF5099	0.64	-1.1
2,116,256	+		GFF5099	0.75	+0.2
2,116,256	+		GFF5099	0.75	-1.8
2,116,397	+		GFF5099	0.88	-0.4
2,116,398	-		GFF5099	0.89	+0.2
2,116,398	-		GFF5099	0.89	-0.6