Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF50

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF49 and GFF50 are separated by 59 nucleotidesGFF50 and GFF51 overlap by 4 nucleotides GFF49 - hypothetical protein, at 49,401 to 50,996 GFF49 GFF50 - glycosyl transferase, group 1 family protein, at 51,056 to 52,216 GFF50 GFF51 - O-antigen flippase Wzx, at 52,213 to 53,523 GFF51 Position (kb) 51 52 53Strain fitness (log2 ratio) -1 0 1at 50.074 kb on + strand, within GFF49at 50.653 kb on + strand, within GFF49at 51.421 kb on - strand, within GFF50at 51.642 kb on + strand, within GFF50at 51.864 kb on + strand, within GFF50at 51.864 kb on + strand, within GFF50at 51.927 kb on + strand, within GFF50at 52.045 kb on - strand, within GFF50at 52.733 kb on + strand, within GFF51

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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50,074 + GFF49 0.42 +0.7
50,653 + GFF49 0.78 -0.6
51,421 - GFF50 0.31 -0.3
51,642 + GFF50 0.50 +0.3
51,864 + GFF50 0.70 +1.2
51,864 + GFF50 0.70 +0.4
51,927 + GFF50 0.75 -0.8
52,045 - GFF50 0.85 -0.3
52,733 + GFF51 0.40 +1.4

Or see this region's nucleotide sequence