Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4665

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,615,222	+		GFF4664	0.11	-0.5
1,615,222	+		GFF4664	0.11	+0.0
1,615,223	-		GFF4664	0.11	-0.7
1,615,223	-		GFF4664	0.11	-0.5
1,615,223	-		GFF4664	0.11	-1.3
1,615,223	-		GFF4664	0.11	+0.2
1,615,223	-		GFF4664	0.11	+1.2
1,615,223	-		GFF4664	0.11	+0.8
1,615,231	+		GFF4664	0.14	-0.0
1,615,231	+		GFF4664	0.14	-0.8
1,615,231	+		GFF4664	0.14	-0.2
1,615,231	+		GFF4664	0.14	-0.8
1,615,232	-		GFF4664	0.14	+1.2
1,615,232	-		GFF4664	0.14	-0.4
1,615,232	-		GFF4664	0.14	-0.8
1,615,232	-		GFF4664	0.14	-0.3
1,615,232	-		GFF4664	0.14	+0.2
1,615,232	-		GFF4664	0.14	+0.5
1,615,232	-		GFF4664	0.14	-0.5
1,615,259	+		GFF4664	0.22	+0.2
1,615,259	+		GFF4664	0.22	+0.0
1,615,259	+		GFF4664	0.22	+0.7
1,615,259	+		GFF4664	0.22	+0.2
1,615,259	+		GFF4664	0.22	+0.2
1,615,260	-		GFF4664	0.23	+0.8
1,615,260	-		GFF4664	0.23	+0.3
1,615,260	-		GFF4664	0.23	+0.8
1,615,260	-		GFF4664	0.23	-0.7
1,615,283	-		GFF4664	0.30	-0.6
1,615,303	+		GFF4664	0.36	+2.2
1,615,303	+		GFF4664	0.36	-0.5
1,615,303	+		GFF4664	0.36	-0.6
1,615,303	+		GFF4664	0.36	-0.8
1,615,304	-		GFF4664	0.36	+0.7
1,615,304	-		GFF4664	0.36	-0.1
1,615,304	-		GFF4664	0.36	-0.0
1,615,304	-		GFF4664	0.36	-0.2
1,615,304	-		GFF4664	0.36	-0.4
1,615,304	-		GFF4664	0.36	+2.2
1,615,729	+		GFF4665	0.17	-1.8
1,615,729	+		GFF4665	0.17	+0.2
1,615,730	-		GFF4665	0.17	-1.6
1,615,730	-		GFF4665	0.17	-1.6
1,615,876	+		GFF4665	0.35	-2.2
1,615,876	+		GFF4665	0.35	-0.2
1,615,877	-		GFF4665	0.35	-2.2
1,615,877	-		GFF4665	0.35	-2.5
1,615,879	+		GFF4665	0.35	-1.7
1,615,880	-		GFF4665	0.36	-0.3
1,616,200	+		GFF4665	0.75	-1.1
1,616,200	+		GFF4665	0.75	-1.6
1,616,200	+		GFF4665	0.75	+0.1
1,616,200	+		GFF4665	0.75	-2.5
1,616,200	+		GFF4665	0.75	-1.1
1,616,200	+		GFF4665	0.75	+0.1
1,616,200	+		GFF4665	0.75	-1.1
1,616,200	+		GFF4665	0.75	-1.1
1,616,200	+		GFF4665	0.75	-1.1
1,616,201	-		GFF4665	0.75	-2.3
1,616,201	-		GFF4665	0.75	-1.4
1,616,201	-		GFF4665	0.75	+0.4
1,616,201	-		GFF4665	0.75	-0.8
1,616,201	-		GFF4665	0.75	-0.8
1,616,201	-		GFF4665	0.75	+0.1
1,616,201	-		GFF4665	0.75	-2.2
1,616,201	-		GFF4665	0.75	-1.0
1,616,201	-		GFF4665	0.75	-0.2
1,616,201	-		GFF4665	0.75	-0.1
1,616,201	-		GFF4665	0.75	-0.6
1,616,201	-		GFF4665	0.75	-1.4
1,616,201	-		GFF4665	0.75	+1.0
1,616,243	-		GFF4665	0.80	-0.8
1,616,243	-		GFF4665	0.80	-1.9
1,616,287	+		GFF4665	0.86	-3.1
1,616,287	+		GFF4665	0.86	-0.5
1,616,287	+		GFF4665	0.86	+0.6
1,616,287	+		GFF4665	0.86	+0.2
1,616,287	+		GFF4665	0.86	-0.8
1,616,288	-		GFF4665	0.86	-0.7
1,616,288	-		GFF4665	0.86	-1.2
1,616,288	-		GFF4665	0.86	-1.3
1,616,288	-		GFF4665	0.86	-1.2
1,616,288	-		GFF4665	0.86	-1.6
1,616,427	-				-0.8
1,616,616	+		GFF4666	0.31	+0.7
1,616,617	-		GFF4666	0.31	-0.1
1,616,617	-		GFF4666	0.31	+0.5
1,616,811	+		GFF4666	0.59	-0.3
1,616,811	+		GFF4666	0.59	-1.3
1,616,812	-		GFF4666	0.59	-0.4
1,616,812	-		GFF4666	0.59	+0.7
1,616,812	-		GFF4666	0.59	+0.2
1,616,812	-		GFF4666	0.59	-1.3
1,616,812	-		GFF4666	0.59	-0.8
1,616,812	-		GFF4666	0.59	+2.2
1,616,812	-		GFF4666	0.59	-0.2
1,616,877	+		GFF4666	0.68	+0.4
1,616,877	+		GFF4666	0.68	-0.3
1,616,877	+		GFF4666	0.68	-0.2
1,616,877	+		GFF4666	0.68	+0.2
1,616,877	+		GFF4666	0.68	-1.0
1,616,877	+		GFF4666	0.68	-0.5
1,616,877	+		GFF4666	0.68	-1.1
1,616,877	+		GFF4666	0.68	+0.2
1,616,877	+		GFF4666	0.68	+0.8
1,616,878	-		GFF4666	0.68	-0.8
1,616,878	-		GFF4666	0.68	-2.8
1,616,878	-		GFF4666	0.68	-0.1
1,616,878	-		GFF4666	0.68	-0.5
1,616,878	-		GFF4666	0.68	-0.4
1,616,878	-		GFF4666	0.68	-0.2
1,617,054	-				+0.2
1,617,092	+				+0.5
1,617,092	+				-0.1
1,617,092	+				-0.4
1,617,092	+				-0.4
1,617,092	+				-0.2
1,617,092	+				-0.1
1,617,093	-				-0.4
1,617,093	-				+0.4
1,617,093	-				+0.7
1,617,093	-				+6.1
1,617,093	-				-0.3
1,617,093	-				+0.8
1,617,093	-				+0.0
1,617,147	+				+0.4
1,617,147	+				+0.5
1,617,147	+				+0.2
1,617,147	+				+1.2
1,617,147	+				+0.4
1,617,147	+				+0.5
1,617,147	+				+0.6
1,617,148	-				+2.1
1,617,148	-				+0.2
1,617,148	-				-0.6
1,617,148	-				+0.8
1,617,148	-				+0.1
1,617,148	-				+1.2
1,617,148	-				+1.2
1,617,148	-				+0.8
1,617,153	+				-1.5
1,617,153	+				+0.4
1,617,153	+				+0.3
1,617,153	+				+1.2
1,617,154	-				+0.6
1,617,154	-				+0.4
1,617,154	-				-0.8
1,617,154	-				+0.1
1,617,154	-				+0.3
1,617,154	-				-0.6
1,617,154	-				+0.1
1,617,314	+		GFF4667	0.19	+0.7
1,617,314	+		GFF4667	0.19	-0.2
1,617,343	+		GFF4667	0.25	-0.0
1,617,343	+		GFF4667	0.25	-0.6
1,617,344	-		GFF4667	0.25	+0.1