Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4604

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,548,757	+		GFF4603	0.74	+1.2
1,548,758	-		GFF4603	0.74	+0.4
1,549,234	-				+0.7
1,549,395	+		GFF4604	0.20	-0.9
1,549,395	+		GFF4604	0.20	-0.4
1,549,395	+		GFF4604	0.20	+1.7
1,549,395	+		GFF4604	0.20	-1.0
1,549,395	+		GFF4604	0.20	+0.4
1,549,396	-		GFF4604	0.20	-0.9
1,549,396	-		GFF4604	0.20	+1.2
1,549,396	-		GFF4604	0.20	-1.2
1,549,396	-		GFF4604	0.20	+0.4
1,549,396	-		GFF4604	0.20	+0.7
1,549,533	+		GFF4604	0.35	-1.2
1,549,534	-		GFF4604	0.35	-0.7
1,549,678	-		GFF4604	0.50	-0.6
1,549,678	-		GFF4604	0.50	-0.5
1,549,758	+		GFF4604	0.59	-0.3
1,550,118	+				-0.6
1,550,118	+				-0.2
1,550,119	-				-0.3
1,550,119	-				+3.1
1,550,119	-				+2.3
1,550,204	+		GFF4605	0.12	+0.8
1,550,204	+		GFF4605	0.12	-0.8
1,550,204	+		GFF4605	0.12	-0.8
1,550,205	-		GFF4605	0.12	+0.4
1,550,333	+		GFF4605	0.40	-1.8
1,550,520	-		GFF4605	0.82	-0.3
1,550,555	+		GFF4605	0.89	-0.5
1,550,556	-		GFF4605	0.90	+0.7
1,550,556	-		GFF4605	0.90	+0.7
1,551,111	+		GFF4606	0.53	-1.4
1,551,111	+		GFF4606	0.53	+0.3
1,551,111	+		GFF4606	0.53	+0.3
1,551,111	+		GFF4606	0.53	-0.3
1,551,112	-		GFF4606	0.53	+0.3
1,551,112	-		GFF4606	0.53	-2.2
1,551,112	-		GFF4606	0.53	+0.1
1,551,112	-		GFF4606	0.53	-0.6