Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4574

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,516,471	+				+0.9
1,516,471	+				-0.6
1,516,471	+				-0.7
1,516,471	+				+0.2
1,516,472	-				+1.7
1,516,472	-				-1.9
1,516,472	-				+1.0
1,516,474	+				-2.6
1,516,475	-				-0.3
1,516,475	-				-0.7
1,516,475	-				+0.2
1,516,475	-				-0.6
1,516,475	-				-1.0
1,516,805	+		GFF4573	0.29	+0.7
1,516,805	+		GFF4573	0.29	-0.8
1,516,805	+		GFF4573	0.29	+0.2
1,516,806	-		GFF4573	0.29	-0.4
1,516,806	-		GFF4573	0.29	-0.5
1,516,806	-		GFF4573	0.29	-0.7
1,516,806	-		GFF4573	0.29	-0.4
1,516,806	-		GFF4573	0.29	+1.2
1,516,967	+		GFF4573	0.49	-0.7
1,517,003	+		GFF4573	0.54	+0.1
1,517,003	+		GFF4573	0.54	-0.7
1,517,004	-		GFF4573	0.54	-0.6
1,517,004	-		GFF4573	0.54	-1.1
1,517,108	+		GFF4573	0.67	-1.0
1,517,108	+		GFF4573	0.67	-1.2
1,517,108	+		GFF4573	0.67	-0.8
1,517,108	+		GFF4573	0.67	+0.2
1,517,108	+		GFF4573	0.67	-0.6
1,517,376	+				-1.1
1,517,376	+				+1.9
1,517,377	-				-1.1
1,517,377	-				-0.9
1,517,377	-				+2.2
1,517,377	-				-1.4
1,517,377	-				+0.0
1,517,377	-				+2.0
1,517,377	-				-0.1
1,517,377	-				-0.6
1,517,424	+				-0.8
1,517,425	-				-0.8
1,517,425	-				-0.2
1,517,425	-				-1.6
1,517,425	-				-0.8
1,517,434	+				-0.1
1,517,434	+				-0.7
1,517,434	+				-0.1
1,517,476	-				-0.7
1,517,526	+		GFF4574	0.23	-0.5
1,517,526	+		GFF4574	0.23	+0.7
1,517,526	+		GFF4574	0.23	-2.2
1,517,526	+		GFF4574	0.23	+0.5
1,517,526	+		GFF4574	0.23	-0.7
1,517,526	+		GFF4574	0.23	+0.0
1,517,527	-		GFF4574	0.24	-0.2
1,517,527	-		GFF4574	0.24	+0.0
1,517,527	-		GFF4574	0.24	-0.1
1,517,527	-		GFF4574	0.24	-0.1
1,517,527	-		GFF4574	0.24	-0.8
1,517,527	-		GFF4574	0.24	-0.0
1,517,527	-		GFF4574	0.24	+0.8
1,517,604	+		GFF4574	0.51	+0.8
1,517,604	+		GFF4574	0.51	-0.1
1,517,605	-		GFF4574	0.52	+1.5
1,517,605	-		GFF4574	0.52	+0.2
1,518,304	+				+0.5
1,518,305	-				-1.2
1,518,305	-				+0.7
1,518,317	+				-0.3
1,518,317	+				+0.8
1,518,318	-				-0.4
1,518,318	-				+0.1
1,518,318	-				+0.7