Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4561

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,497,881	+		GFF4560	0.35	-1.3
1,497,881	+		GFF4560	0.35	+0.2
1,497,881	+		GFF4560	0.35	-0.3
1,497,881	+		GFF4560	0.35	-1.6
1,497,881	+		GFF4560	0.35	+1.2
1,497,881	+		GFF4560	0.35	+0.7
1,497,882	-		GFF4560	0.35	+1.3
1,497,882	-		GFF4560	0.35	+2.1
1,497,882	-		GFF4560	0.35	+0.2
1,497,882	-		GFF4560	0.35	-0.1
1,497,882	-		GFF4560	0.35	+1.2
1,498,047	-		GFF4560	0.46	+0.4
1,498,241	+		GFF4560	0.60	+0.4
1,498,241	+		GFF4560	0.60	-0.4
1,498,241	+		GFF4560	0.60	+0.8
1,498,242	-		GFF4560	0.60	+0.2
1,498,242	-		GFF4560	0.60	-0.6
1,498,466	+		GFF4560	0.76	+1.0
1,498,626	-		GFF4560	0.87	+0.2
1,498,720	+				+1.1
1,498,742	+				+1.1
1,498,742	+				-0.7
1,498,742	+				-0.1
1,498,742	+				-0.2
1,498,742	+				+0.6
1,498,743	-				-1.1
1,498,743	-				-0.8
1,498,743	-				-0.6
1,498,743	-				-1.1
1,498,743	-				+0.4
1,498,743	-				+0.1
1,498,743	-				-0.6
1,498,884	+				-1.6
1,499,284	+		GFF4561	0.43	-0.5
1,499,285	-		GFF4561	0.43	+1.2
1,499,285	-		GFF4561	0.43	-0.3
1,499,285	-		GFF4561	0.43	-0.7
1,499,285	-		GFF4561	0.43	+0.5
1,499,755	+		GFF4561	0.85	-0.1
1,499,756	-		GFF4561	0.85	+0.1
1,499,756	-		GFF4561	0.85	-0.9
1,499,756	-		GFF4561	0.85	-0.8
1,499,756	-		GFF4561	0.85	-2.2
1,499,756	-		GFF4561	0.85	+1.5
1,499,756	-		GFF4561	0.85	-0.2
1,499,756	-		GFF4561	0.85	-1.8
1,499,756	-		GFF4561	0.85	+0.6
1,499,756	-		GFF4561	0.85	-0.2
1,499,756	-		GFF4561	0.85	+0.9
1,499,756	-		GFF4561	0.85	+0.8
1,499,756	-		GFF4561	0.85	+0.1
1,500,176	+				+0.1
1,500,176	+				-0.5
1,500,176	+				-0.1
1,500,176	+				-0.5
1,500,177	-				+0.2
1,500,177	-				+1.2
1,500,177	-				+0.6
1,500,177	-				-0.5
1,500,177	-				-0.6
1,500,177	-				+0.8
1,500,177	-				-0.2
1,500,177	-				+0.2
1,500,447	+		GFF4562	0.16	+0.3
1,500,448	-		GFF4562	0.16	+0.8
1,500,540	-		GFF4562	0.19	+1.4