Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4356

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4354 and GFF4355 overlap by 7 nucleotidesGFF4355 and GFF4356 are separated by 193 nucleotidesGFF4356 and GFF4357 are separated by 73 nucleotides GFF4354 - UPF0125 protein yfjF, at 1,283,479 to 1,283,808 GFF4354 GFF4355 - PROBABLE TRANSMEMBRANE PROTEIN, at 1,283,802 to 1,284,353 GFF4355 GFF4356 - Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205), at 1,284,547 to 1,286,016 GFF4356 GFF4357 - GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2), at 1,286,090 to 1,287,706 GFF4357 Position (kb) 1284 1285 1286 1287Strain fitness (log2 ratio) -1 0 1at 1284.044 kb on - strand, within GFF4355at 1284.386 kb on - strandat 1284.519 kb on + strandat 1284.519 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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1,284,044 - GFF4355 0.44 +0.1
1,284,386 - +0.5
1,284,519 + +0.3
1,284,519 + +0.2

Or see this region's nucleotide sequence