Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4304 and GFF4305 are separated by 4 nucleotides GFF4305 and GFF4306 overlap by 4 nucleotides GFF4306 and GFF4307 are separated by 5 nucleotides
GFF4304 - Aspartate aminotransferase (EC 2.6.1.1), at 1,231,840 to 1,233,018
GFF4304
GFF4305 - Alkanesulfonate utilization operon LysR-family regulator CbI, at 1,233,023 to 1,233,967
GFF4305
GFF4306 - Sirohydrochlorin cobaltochelatase (EC 4.99.1.3), at 1,233,964 to 1,234,329
GFF4306
GFF4307 - FIG000906: Predicted Permease, at 1,234,335 to 1,235,453
GFF4307
Position (kb) 1233
1234 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1232.054 kb on + strand, within GFF4304 at 1232.054 kb on + strand, within GFF4304 at 1232.055 kb on - strand, within GFF4304 at 1232.055 kb on - strand, within GFF4304 at 1232.055 kb on - strand, within GFF4304 at 1232.129 kb on + strand, within GFF4304 at 1232.129 kb on + strand, within GFF4304 at 1232.130 kb on - strand, within GFF4304 at 1232.130 kb on - strand, within GFF4304 at 1232.150 kb on + strand, within GFF4304 at 1232.151 kb on - strand, within GFF4304 at 1232.171 kb on + strand, within GFF4304 at 1232.171 kb on + strand, within GFF4304 at 1232.171 kb on + strand, within GFF4304 at 1232.172 kb on - strand, within GFF4304 at 1232.172 kb on - strand, within GFF4304 at 1232.172 kb on - strand, within GFF4304 at 1232.297 kb on + strand, within GFF4304 at 1232.297 kb on + strand, within GFF4304 at 1232.297 kb on + strand, within GFF4304 at 1232.297 kb on + strand, within GFF4304 at 1232.297 kb on + strand, within GFF4304 at 1232.298 kb on - strand, within GFF4304 at 1232.298 kb on - strand, within GFF4304 at 1232.298 kb on - strand, within GFF4304 at 1232.396 kb on + strand, within GFF4304 at 1232.397 kb on - strand, within GFF4304 at 1232.627 kb on + strand, within GFF4304 at 1232.627 kb on + strand, within GFF4304 at 1232.627 kb on + strand, within GFF4304 at 1232.627 kb on + strand, within GFF4304 at 1232.628 kb on - strand, within GFF4304 at 1232.628 kb on - strand, within GFF4304 at 1232.628 kb on - strand, within GFF4304 at 1232.628 kb on - strand, within GFF4304 at 1232.628 kb on - strand, within GFF4304 at 1232.628 kb on - strand, within GFF4304 at 1232.628 kb on - strand, within GFF4304 at 1232.628 kb on - strand, within GFF4304 at 1232.628 kb on - strand, within GFF4304 at 1232.628 kb on - strand, within GFF4304 at 1232.636 kb on + strand, within GFF4304 at 1232.822 kb on + strand, within GFF4304 at 1232.823 kb on - strand, within GFF4304 at 1233.033 kb on + strand at 1233.033 kb on + strand at 1233.033 kb on + strand at 1233.034 kb on - strand at 1233.034 kb on - strand at 1233.034 kb on - strand at 1234.212 kb on - strand, within GFF4306
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 1,232,054 + GFF4304 0.18 -0.1 1,232,054 + GFF4304 0.18 +0.1 1,232,055 - GFF4304 0.18 -0.2 1,232,055 - GFF4304 0.18 -0.3 1,232,055 - GFF4304 0.18 -0.2 1,232,129 + GFF4304 0.25 -0.2 1,232,129 + GFF4304 0.25 +2.3 1,232,130 - GFF4304 0.25 -0.1 1,232,130 - GFF4304 0.25 +0.5 1,232,150 + GFF4304 0.26 +0.8 1,232,151 - GFF4304 0.26 -1.5 1,232,171 + GFF4304 0.28 +0.4 1,232,171 + GFF4304 0.28 -0.2 1,232,171 + GFF4304 0.28 +0.9 1,232,172 - GFF4304 0.28 +0.1 1,232,172 - GFF4304 0.28 +0.3 1,232,172 - GFF4304 0.28 -0.6 1,232,297 + GFF4304 0.39 +0.7 1,232,297 + GFF4304 0.39 +0.4 1,232,297 + GFF4304 0.39 -0.7 1,232,297 + GFF4304 0.39 -0.0 1,232,297 + GFF4304 0.39 +0.3 1,232,298 - GFF4304 0.39 +0.7 1,232,298 - GFF4304 0.39 +0.5 1,232,298 - GFF4304 0.39 +1.1 1,232,396 + GFF4304 0.47 -0.5 1,232,397 - GFF4304 0.47 +0.2 1,232,627 + GFF4304 0.67 -0.2 1,232,627 + GFF4304 0.67 +2.1 1,232,627 + GFF4304 0.67 -2.3 1,232,627 + GFF4304 0.67 -0.7 1,232,628 - GFF4304 0.67 -0.7 1,232,628 - GFF4304 0.67 -0.6 1,232,628 - GFF4304 0.67 +2.0 1,232,628 - GFF4304 0.67 +0.0 1,232,628 - GFF4304 0.67 -0.4 1,232,628 - GFF4304 0.67 -1.0 1,232,628 - GFF4304 0.67 +1.0 1,232,628 - GFF4304 0.67 +0.7 1,232,628 - GFF4304 0.67 -0.1 1,232,628 - GFF4304 0.67 -0.0 1,232,636 + GFF4304 0.68 +0.3 1,232,822 + GFF4304 0.83 -0.0 1,232,823 - GFF4304 0.83 -0.3 1,233,033 + +2.4 1,233,033 + +1.8 1,233,033 + +1.4 1,233,034 - +1.7 1,233,034 - +2.0 1,233,034 - +2.0 1,234,212 - GFF4306 0.68 -0.8
Or see this region's nucleotide sequence