Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4301

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,225,095	+		GFF4300	0.37	+1.3
1,225,095	+		GFF4300	0.37	+0.3
1,225,096	-		GFF4300	0.37	+0.1
1,225,096	-		GFF4300	0.37	-0.3
1,225,096	-		GFF4300	0.37	-0.7
1,225,096	-		GFF4300	0.37	+0.3
1,225,096	-		GFF4300	0.37	+0.6
1,225,096	-		GFF4300	0.37	+0.8
1,225,096	-		GFF4300	0.37	-0.6
1,225,188	+		GFF4300	0.43	-0.7
1,225,188	+		GFF4300	0.43	+0.3
1,225,188	+		GFF4300	0.43	+0.3
1,225,188	+		GFF4300	0.43	-0.3
1,225,189	-		GFF4300	0.44	-0.3
1,225,701	+		GFF4300	0.82	+0.2
1,225,701	+		GFF4300	0.82	-1.5
1,225,701	+		GFF4300	0.82	-0.6
1,225,702	-		GFF4300	0.82	+0.5
1,225,739	+		GFF4300	0.85	-0.1
1,225,739	+		GFF4300	0.85	+0.5
1,225,891	-				+3.0
1,226,320	+				-0.9
1,226,320	+				-0.5
1,226,320	+				+0.2
1,226,321	-				-1.0
1,226,321	-				-0.4
1,226,321	-				-0.2
1,226,425	+		GFF4301	0.10	+0.3
1,226,425	+		GFF4301	0.10	-0.5
1,226,488	+		GFF4301	0.12	-0.3
1,226,489	-		GFF4301	0.12	+0.1
1,226,573	-		GFF4301	0.14	+0.3
1,226,671	+		GFF4301	0.17	-1.5
1,226,672	-		GFF4301	0.17	-0.7
1,226,672	-		GFF4301	0.17	+0.1
1,226,995	+		GFF4301	0.25	-0.6
1,226,996	-		GFF4301	0.25	-0.1
1,227,607	+		GFF4301	0.41	-0.7
1,227,607	+		GFF4301	0.41	-1.1
1,227,733	+		GFF4301	0.44	-0.1
1,227,733	+		GFF4301	0.44	+0.2
1,227,734	-		GFF4301	0.44	-0.6
1,227,808	+		GFF4301	0.46	-0.1
1,227,809	-		GFF4301	0.46	-0.2
1,228,051	+		GFF4301	0.52	-0.7
1,228,051	+		GFF4301	0.52	-0.9
1,228,052	-		GFF4301	0.52	-0.8
1,228,052	-		GFF4301	0.52	+0.1
1,228,066	+		GFF4301	0.53	+0.9
1,228,066	+		GFF4301	0.53	-0.0
1,228,067	-		GFF4301	0.53	+1.3
1,228,067	-		GFF4301	0.53	-1.6
1,228,124	-		GFF4301	0.54	-0.2
1,228,274	-		GFF4301	0.58	+0.5
1,228,274	-		GFF4301	0.58	+0.1
1,228,274	-		GFF4301	0.58	-0.3
1,228,327	+		GFF4301	0.59	+0.4
1,228,328	-		GFF4301	0.59	-0.4
1,228,466	-		GFF4301	0.63	-0.5
1,228,466	-		GFF4301	0.63	-0.4
1,229,239	+		GFF4301	0.83	-0.1
1,229,240	-		GFF4301	0.83	-1.0
1,229,284	+		GFF4301	0.84	+1.9
1,229,285	-		GFF4301	0.84	-0.7
1,229,285	-		GFF4301	0.84	-1.2
1,229,608	+				-0.4
1,229,609	-				+0.1
1,230,263	+		GFF4302	0.48	+1.5
1,230,263	+		GFF4302	0.48	-0.6
1,230,264	-		GFF4302	0.48	-0.6
1,230,264	-		GFF4302	0.48	-0.8
1,230,476	+		GFF4302	0.78	-0.1