Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4258

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,181,472	+		GFF4257	0.26	+4.1
1,181,472	+		GFF4257	0.26	+3.4
1,181,472	+		GFF4257	0.26	+2.8
1,181,473	-		GFF4257	0.26	+2.3
1,181,473	-		GFF4257	0.26	+2.4
1,181,535	+		GFF4257	0.34	+2.6
1,181,536	-		GFF4257	0.34	+3.6
1,181,697	+		GFF4257	0.55	+2.7
1,181,697	+		GFF4257	0.55	+2.9
1,181,697	+		GFF4257	0.55	+2.9
1,181,697	+		GFF4257	0.55	+2.6
1,181,697	+		GFF4257	0.55	+2.8
1,181,698	-		GFF4257	0.55	+4.5
1,181,700	+		GFF4257	0.56	+3.5
1,181,700	+		GFF4257	0.56	+2.3
1,181,700	+		GFF4257	0.56	+3.4
1,181,700	+		GFF4257	0.56	+3.1
1,181,700	+		GFF4257	0.56	+3.4
1,181,701	-		GFF4257	0.56	+0.6
1,181,701	-		GFF4257	0.56	+3.3
1,181,814	+		GFF4257	0.70	+3.6
1,181,814	+		GFF4257	0.70	+1.7
1,181,814	+		GFF4257	0.70	+3.8
1,182,006	+				+2.4
1,182,006	+				+3.4
1,182,006	+				+2.8
1,182,006	+				+3.0
1,182,006	+				+2.8
1,182,006	+				+3.0
1,182,006	+				+2.1
1,182,006	+				+2.8
1,182,006	+				+2.2
1,182,006	+				+2.9
1,182,006	+				+2.8
1,182,007	-				+2.8
1,182,007	-				+2.6
1,182,007	-				+2.6
1,182,007	-				+2.8
1,182,007	-				+1.8
1,182,007	-				+2.8
1,182,007	-				+2.5
1,182,007	-				+2.6
1,182,007	-				+4.0
1,182,007	-				+2.4
1,182,007	-				+2.6
1,182,007	-				+2.6
1,182,007	-				+4.0
1,182,007	-				+2.0
1,182,060	-				+0.1
1,182,069	+				+1.9
1,182,069	+				+0.6
1,182,069	+				+0.3
1,182,070	-				+0.3
1,182,070	-				+1.1
1,182,070	-				+0.9
1,182,070	-				+0.8
1,182,070	-				+1.6
1,182,070	-				+1.0
1,182,164	+				-0.6
1,182,164	+				-1.5
1,182,165	-				+1.0
1,182,202	+				-3.0
1,182,202	+				+0.6
1,182,202	+				-1.0
1,182,202	+				-1.8
1,182,203	-				-0.3
1,182,203	-				-2.7
1,182,203	-				-2.5
1,182,203	-				-0.5
1,182,203	-				-3.2
1,182,203	-				-1.6
1,182,203	-				-1.9
1,182,259	+		GFF4258	0.12	-3.0
1,182,259	+		GFF4258	0.12	-3.0
1,182,628	+		GFF4258	0.60	-1.9
1,182,628	+		GFF4258	0.60	-2.8
1,182,628	+		GFF4258	0.60	-3.2
1,182,629	-		GFF4258	0.61	-1.9
1,182,629	-		GFF4258	0.61	-1.1
1,182,629	-		GFF4258	0.61	-1.2
1,182,629	-		GFF4258	0.61	+0.6
1,182,701	+		GFF4258	0.70	-2.6
1,182,701	+		GFF4258	0.70	-2.2
1,182,702	-		GFF4258	0.70	-2.7
1,182,724	+		GFF4258	0.73	-1.0
1,182,763	+		GFF4258	0.78	-1.0
1,182,764	-		GFF4258	0.78	-2.3
1,182,817	+		GFF4258	0.85	-3.0
1,182,818	-		GFF4258	0.86	-0.5
1,182,818	-		GFF4258	0.86	-1.7
1,182,818	-		GFF4258	0.86	-2.9
1,182,957	+				-1.2
1,182,957	+				-0.4
1,182,992	-				-0.9
1,183,186	+		GFF4259	0.49	-0.3
1,183,187	-		GFF4259	0.49	-1.0
1,183,452	+				-2.4
1,183,453	-				-0.8
1,183,542	+				-0.1
1,183,542	+				+0.4
1,183,542	+				+0.7
1,183,543	-				+1.9
1,183,543	-				+0.3
1,183,543	-				-0.6
1,183,543	-				+1.1
1,183,543	-				-0.2