Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4225

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,137,197	+		GFF4224	0.25	-0.8
1,137,485	+		GFF4224	0.56	-0.4
1,137,486	-		GFF4224	0.56	+0.5
1,137,486	-		GFF4224	0.56	+0.4
1,137,503	+		GFF4224	0.58	-0.3
1,137,503	+		GFF4224	0.58	+0.0
1,137,584	+		GFF4224	0.67	+0.5
1,137,585	-		GFF4224	0.67	-0.6
1,137,617	+		GFF4224	0.70	+1.4
1,137,617	+		GFF4224	0.70	+0.5
1,137,617	+		GFF4224	0.70	-0.6
1,137,617	+		GFF4224	0.70	-0.2
1,137,618	-		GFF4224	0.70	-2.0
1,137,618	-		GFF4224	0.70	+0.1
1,137,618	-		GFF4224	0.70	+0.9
1,137,618	-		GFF4224	0.70	-0.1
1,137,618	-		GFF4224	0.70	-2.4
1,137,731	+		GFF4224	0.83	+1.3
1,137,732	-		GFF4224	0.83	+1.2
1,137,892	+				-0.4
1,138,287	-		GFF4225	0.33	+0.1
1,138,484	+		GFF4225	0.51	+0.8
1,138,484	+		GFF4225	0.51	+0.3
1,138,484	+		GFF4225	0.51	+1.3
1,138,485	-		GFF4225	0.51	+0.4
1,138,485	-		GFF4225	0.51	-1.3
1,138,485	-		GFF4225	0.51	-1.1
1,138,652	+		GFF4225	0.66	+0.3
1,138,652	+		GFF4225	0.66	-0.4
1,138,652	+		GFF4225	0.66	-1.2
1,138,653	-		GFF4225	0.67	-0.6
1,138,653	-		GFF4225	0.67	-0.9
1,138,653	-		GFF4225	0.67	-0.6
1,138,653	-		GFF4225	0.67	-1.0
1,138,653	-		GFF4225	0.67	-0.3
1,138,653	-		GFF4225	0.67	-0.4
1,138,653	-		GFF4225	0.67	-0.6
1,138,653	-		GFF4225	0.67	-0.7
1,139,018	+				-1.0
1,139,019	-				+0.3
1,139,223	-				+2.8
1,139,318	+		GFF4226	0.11	+3.3
1,139,318	+		GFF4226	0.11	+3.0
1,139,318	+		GFF4226	0.11	+3.1
1,139,319	-		GFF4226	0.11	+2.2
1,139,319	-		GFF4226	0.11	+3.2
1,139,319	-		GFF4226	0.11	+3.3
1,139,319	-		GFF4226	0.11	+3.2
1,139,319	-		GFF4226	0.11	+3.4
1,139,319	-		GFF4226	0.11	+3.1
1,139,319	-		GFF4226	0.11	+3.0
1,139,319	-		GFF4226	0.11	+3.6
1,139,319	-		GFF4226	0.11	+2.8
1,139,333	+		GFF4226	0.11	+2.7
1,139,333	+		GFF4226	0.11	+3.2
1,139,334	-		GFF4226	0.11	+1.3
1,139,334	-		GFF4226	0.11	+3.1
1,139,378	+		GFF4226	0.14	+3.1
1,139,379	-		GFF4226	0.14	+3.3
1,139,379	-		GFF4226	0.14	+3.0
1,139,387	+		GFF4226	0.14	+4.2
1,139,387	+		GFF4226	0.14	+3.5
1,139,387	+		GFF4226	0.14	+4.0
1,139,388	-		GFF4226	0.14	+3.2
1,139,388	-		GFF4226	0.14	+3.1
1,139,388	-		GFF4226	0.14	+4.5
1,139,870	+		GFF4226	0.37	+3.6
1,139,870	+		GFF4226	0.37	+3.1
1,139,966	+		GFF4226	0.42	+3.5
1,139,967	-		GFF4226	0.42	+3.4
1,139,967	-		GFF4226	0.42	+3.3