Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4221 and GFF4222 are separated by 10 nucleotides GFF4222 and GFF4223 are separated by 225 nucleotides
GFF4221 - alternate gene name: yzbB, at 1,134,182 to 1,135,384
GFF4221
GFF4222 - hypothetical protein, at 1,135,395 to 1,135,904
GFF4222
GFF4223 - Putative hemolysin, at 1,136,130 to 1,136,972
GFF4223
Position (kb) 1135
1136 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1134.444 kb on + strand, within GFF4221 at 1134.445 kb on - strand, within GFF4221 at 1134.687 kb on + strand, within GFF4221 at 1134.760 kb on - strand, within GFF4221 at 1134.760 kb on - strand, within GFF4221 at 1134.807 kb on + strand, within GFF4221 at 1134.808 kb on - strand, within GFF4221 at 1135.011 kb on + strand, within GFF4221 at 1135.012 kb on - strand, within GFF4221 at 1135.012 kb on - strand, within GFF4221 at 1135.012 kb on - strand, within GFF4221 at 1135.035 kb on + strand, within GFF4221 at 1135.035 kb on + strand, within GFF4221 at 1135.035 kb on + strand, within GFF4221 at 1135.035 kb on + strand, within GFF4221 at 1135.035 kb on + strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.036 kb on - strand, within GFF4221 at 1135.161 kb on + strand, within GFF4221 at 1135.162 kb on - strand, within GFF4221 at 1135.162 kb on - strand, within GFF4221 at 1135.162 kb on - strand, within GFF4221 at 1135.480 kb on + strand, within GFF4222 at 1135.481 kb on - strand, within GFF4222 at 1135.481 kb on - strand, within GFF4222 at 1135.847 kb on - strand, within GFF4222 at 1135.975 kb on + strand at 1135.975 kb on + strand at 1135.975 kb on + strand at 1135.976 kb on - strand at 1136.430 kb on + strand, within GFF4223 at 1136.430 kb on + strand, within GFF4223 at 1136.475 kb on + strand, within GFF4223 at 1136.475 kb on + strand, within GFF4223 at 1136.475 kb on + strand, within GFF4223 at 1136.475 kb on + strand, within GFF4223 at 1136.475 kb on + strand, within GFF4223 at 1136.475 kb on + strand, within GFF4223 at 1136.476 kb on - strand, within GFF4223 at 1136.476 kb on - strand, within GFF4223 at 1136.841 kb on + strand, within GFF4223 at 1136.842 kb on - strand, within GFF4223
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 1,134,444 + GFF4221 0.22 -0.3 1,134,445 - GFF4221 0.22 +0.8 1,134,687 + GFF4221 0.42 +0.1 1,134,760 - GFF4221 0.48 -0.3 1,134,760 - GFF4221 0.48 +0.9 1,134,807 + GFF4221 0.52 +0.0 1,134,808 - GFF4221 0.52 -0.4 1,135,011 + GFF4221 0.69 -1.4 1,135,012 - GFF4221 0.69 -0.5 1,135,012 - GFF4221 0.69 +0.1 1,135,012 - GFF4221 0.69 +0.0 1,135,035 + GFF4221 0.71 +0.8 1,135,035 + GFF4221 0.71 +0.7 1,135,035 + GFF4221 0.71 +0.3 1,135,035 + GFF4221 0.71 -0.3 1,135,035 + GFF4221 0.71 +0.2 1,135,036 - GFF4221 0.71 +0.3 1,135,036 - GFF4221 0.71 -1.0 1,135,036 - GFF4221 0.71 -1.1 1,135,036 - GFF4221 0.71 +0.5 1,135,036 - GFF4221 0.71 -0.2 1,135,036 - GFF4221 0.71 +0.2 1,135,036 - GFF4221 0.71 +2.5 1,135,036 - GFF4221 0.71 -0.7 1,135,036 - GFF4221 0.71 +1.2 1,135,161 + GFF4221 0.81 -1.1 1,135,162 - GFF4221 0.81 -0.5 1,135,162 - GFF4221 0.81 -0.6 1,135,162 - GFF4221 0.81 -0.0 1,135,480 + GFF4222 0.17 -0.5 1,135,481 - GFF4222 0.17 -0.5 1,135,481 - GFF4222 0.17 -0.9 1,135,847 - GFF4222 0.89 -0.6 1,135,975 + +1.2 1,135,975 + -1.7 1,135,975 + +0.7 1,135,976 - +0.2 1,136,430 + GFF4223 0.36 +0.7 1,136,430 + GFF4223 0.36 +0.1 1,136,475 + GFF4223 0.41 +0.8 1,136,475 + GFF4223 0.41 +0.6 1,136,475 + GFF4223 0.41 +1.1 1,136,475 + GFF4223 0.41 +3.1 1,136,475 + GFF4223 0.41 -2.0 1,136,475 + GFF4223 0.41 -0.9 1,136,476 - GFF4223 0.41 -0.7 1,136,476 - GFF4223 0.41 +1.3 1,136,841 + GFF4223 0.84 +0.2 1,136,842 - GFF4223 0.84 -0.7
Or see this region's nucleotide sequence