Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4186

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,101,603	+		GFF4185	0.29	-0.7
1,101,604	-		GFF4185	0.29	-1.5
1,101,604	-		GFF4185	0.29	-1.7
1,101,604	-		GFF4185	0.29	+0.7
1,101,604	-		GFF4185	0.29	-0.7
1,101,605	+		GFF4185	0.29	-0.6
1,101,606	-		GFF4185	0.29	+0.5
1,101,606	-		GFF4185	0.29	+0.6
1,101,606	-		GFF4185	0.29	-1.3
1,101,606	-		GFF4185	0.29	-1.1
1,101,918	+		GFF4185	0.54	+0.2
1,101,965	+		GFF4185	0.57	+0.6
1,101,965	+		GFF4185	0.57	-1.3
1,101,965	+		GFF4185	0.57	+0.9
1,101,965	+		GFF4185	0.57	-0.5
1,101,965	+		GFF4185	0.57	-1.0
1,101,965	+		GFF4185	0.57	-0.2
1,101,966	-		GFF4185	0.57	+0.3
1,101,966	-		GFF4185	0.57	-0.4
1,101,966	-		GFF4185	0.57	+0.9
1,102,017	+		GFF4185	0.61	-0.3
1,102,017	+		GFF4185	0.61	-0.3
1,102,017	+		GFF4185	0.61	-0.0
1,102,017	+		GFF4185	0.61	+0.3
1,102,017	+		GFF4185	0.61	-0.3
1,102,018	-		GFF4185	0.62	-0.7
1,102,018	-		GFF4185	0.62	-0.4
1,102,078	-		GFF4185	0.66	+0.5
1,102,078	-		GFF4185	0.66	+0.8
1,102,078	-		GFF4185	0.66	+0.1
1,102,095	+		GFF4185	0.68	-0.4
1,102,096	-		GFF4185	0.68	-0.7
1,102,096	-		GFF4185	0.68	-0.6
1,102,096	-		GFF4185	0.68	+0.3
1,102,096	-		GFF4185	0.68	-0.4
1,102,145	+		GFF4185	0.71	+0.0
1,102,145	+		GFF4185	0.71	+0.1
1,102,146	-		GFF4185	0.71	-1.5
1,102,146	-		GFF4185	0.71	-0.4
1,102,146	-		GFF4185	0.71	-0.8
1,102,258	-		GFF4185	0.80	-1.0
1,102,634	+		GFF4186	0.51	+0.3
1,102,634	+		GFF4186	0.51	-0.2
1,102,635	-		GFF4186	0.52	+0.3
1,102,635	-		GFF4186	0.52	-0.1
1,102,635	-		GFF4186	0.52	-0.6
1,102,647	+		GFF4186	0.57	-0.7
1,102,647	+		GFF4186	0.57	+1.3
1,102,647	+		GFF4186	0.57	-0.6
1,102,762	+				+0.2
1,102,762	+				+0.9
1,102,762	+				-0.1
1,102,762	+				+0.2
1,102,762	+				-0.9
1,102,762	+				-0.1
1,102,762	+				-0.7
1,102,763	-				-0.7
1,102,763	-				+1.1
1,102,763	-				+0.6
1,102,763	-				+0.9
1,102,763	-				-0.3
1,102,763	-				+2.0
1,102,763	-				-0.4
1,102,763	-				-0.7
1,102,763	-				-0.8
1,102,763	-				+0.4
1,102,763	-				+0.3
1,102,763	-				+0.2
1,102,763	-				+0.1
1,102,843	+				-0.4
1,102,843	+				-0.1
1,102,843	+				+0.7
1,102,843	+				-0.7
1,102,843	+				+0.8
1,102,843	+				+0.3
1,102,922	+				+0.5
1,102,922	+				-0.7
1,102,922	+				+0.1
1,102,922	+				+1.8
1,102,922	+				+0.2
1,102,922	+				+0.3
1,102,922	+				+0.0
1,102,922	+				+0.5
1,102,922	+				-0.1
1,102,922	+				-0.3
1,102,922	+				-0.6
1,102,922	+				+2.2
1,102,922	+				+0.1
1,102,922	+				+0.0
1,102,922	+				-0.5
1,102,922	+				-1.0
1,102,923	-				-0.5
1,102,923	-				-1.1
1,102,923	-				-1.3
1,102,923	-				+0.3
1,102,923	-				+0.4
1,102,923	-				-0.2
1,102,923	-				-0.4
1,102,923	-				-0.1
1,102,923	-				-0.3
1,102,923	-				-0.7
1,102,923	-				-0.3
1,102,923	-				+1.3
1,102,923	-				+0.5
1,102,923	-				+0.1
1,102,923	-				-0.7
1,102,923	-				+0.2
1,102,923	-				-1.0
1,102,923	-				-0.5
1,102,923	-				-0.8
1,102,923	-				-0.6
1,102,933	+				+0.5
1,102,933	+				-0.6
1,102,934	-				-0.3
1,102,977	+				+0.6
1,102,977	+				+0.2
1,102,977	+				-0.4
1,102,977	+				-2.7
1,102,978	-				+0.1
1,102,978	-				-0.6
1,102,978	-				-0.2
1,102,978	-				-0.3
1,102,978	-				+0.7
1,102,982	+				-0.7
1,102,982	+				-0.8
1,102,982	+				-0.4
1,102,982	+				-0.1
1,102,982	+				+2.7
1,102,983	-				+0.3
1,102,983	-				+0.4
1,102,983	-				+0.0
1,102,983	-				+0.2
1,102,983	-				-0.5
1,102,994	+				+0.3
1,102,994	+				-0.7
1,102,994	+				-0.1
1,102,994	+				-0.3
1,102,994	+				+0.8
1,102,994	+				-0.7
1,102,994	+				-0.7
1,102,994	+				-0.7
1,102,994	+				-0.8
1,102,995	-				-1.3
1,102,995	-				-0.5
1,102,995	-				+0.3
1,102,995	-				+0.2
1,102,995	-				+2.5
1,102,995	-				+4.0
1,102,995	-				-0.3
1,102,995	-				-1.0
1,102,996	-				+0.4
1,102,996	-				+0.3
1,103,019	-				+0.3
1,103,019	-				+0.7
1,103,019	-				+0.0
1,103,106	+				+0.3
1,103,106	+				+0.2
1,103,106	+				-1.5
1,103,106	+				-0.2
1,103,106	+				+0.6
1,103,107	-				-0.4
1,103,127	+				-0.3
1,103,128	-				-0.6
1,103,128	-				-0.4
1,103,128	-				-2.0
1,103,146	+				-0.4
1,103,152	+				+1.3
1,103,153	-				-0.6
1,103,171	+				-0.5
1,103,171	+				+0.0
1,103,171	+				+0.3
1,103,171	+				-0.3
1,103,171	+				+1.1
1,103,171	+				-0.7
1,103,171	+				-0.7
1,103,172	-				+0.6
1,103,172	-				-0.4
1,103,172	-				-0.2
1,103,172	-				-0.3
1,103,172	-				+1.3
1,103,172	-				+1.0
1,103,172	-				+0.3
1,103,172	-				+1.3
1,103,172	-				+0.1
1,103,172	-				-0.6
1,103,173	+				+0.1
1,103,173	+				-0.0
1,103,173	+				+1.3
1,103,173	+				+0.2
1,103,173	+				-0.5
1,103,173	+				+0.5
1,103,173	+				-0.3
1,103,173	+				+0.6
1,103,173	+				-0.5
1,103,173	+				-1.3
1,103,173	+				-0.7
1,103,173	+				+0.4
1,103,173	+				-1.4
1,103,173	+				+0.3
1,103,173	+				+0.5
1,103,173	+				-0.3
1,103,174	-				+0.0
1,103,174	-				-0.1
1,103,174	-				-1.6
1,103,174	-				-0.1
1,103,174	-				-0.4
1,103,174	-				-0.7
1,103,174	-				-2.7
1,103,174	-				-0.4
1,103,174	-				+0.3
1,103,174	-				-0.7
1,103,174	-				+0.1
1,103,174	-				-0.1
1,103,203	+				-0.4
1,103,204	-				+0.9
1,103,204	-				-1.7
1,103,234	+				+0.7
1,103,235	-				+0.6
1,103,235	-				+0.2
1,103,235	-				-0.4
1,103,241	+				-0.1
1,103,242	-				-2.3
1,103,242	-				-1.1
1,103,290	+				-0.3
1,103,334	+				+0.2
1,103,478	+				-0.1
1,103,478	+				-1.7
1,103,478	+				-1.2
1,103,478	+				+0.1
1,103,479	-				+0.6
1,103,479	-				-1.6
1,103,479	-				+0.0
1,103,485	+				+0.4
1,103,486	-				+0.9
1,103,486	-				+1.4
1,103,486	-				+0.7
1,103,537	+				-0.2
1,103,537	+				+1.3
1,103,568	+				-2.3
1,103,569	-				-0.3
1,103,569	-				-0.7
1,103,597	+				+0.0
1,103,598	-				+0.2
1,103,606	+				+0.5
1,103,606	+				+0.2
1,103,606	+				-1.4
1,103,607	-				+0.1
1,103,607	-				+1.1
1,103,612	+				-0.1
1,103,613	-				-0.2
1,103,624	+				+0.7
1,103,624	+				+0.3
1,103,625	-				-0.3
1,103,625	-				-0.5
1,103,625	-				+0.2
1,103,625	-				-0.6
1,103,640	+				+0.6
1,103,640	+				-0.3
1,103,641	-				-0.8
1,103,641	-				+0.7
1,103,650	+				-0.6
1,103,651	-				+0.4
1,103,651	-				-0.2
1,103,651	-				+0.3