Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4158

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,074,181	+				-0.7
1,074,181	+				+0.6
1,074,181	+				+0.1
1,074,181	+				+0.8
1,074,181	+				-0.0
1,074,181	+				+0.1
1,074,181	+				+0.0
1,074,182	-				-0.8
1,074,187	+				+2.9
1,074,188	-				-0.7
1,074,255	+				+1.9
1,074,256	-				+0.1
1,074,256	-				+0.1
1,074,256	-				-0.1
1,074,299	-				-0.3
1,074,718	-				+1.3
1,074,718	-				+0.5
1,074,718	-				-0.7
1,074,718	-				+0.1
1,074,907	+		GFF4157	0.62	+0.1
1,074,907	+		GFF4157	0.62	+0.1
1,074,908	-		GFF4157	0.62	-2.0
1,074,952	+		GFF4157	0.76	+0.9
1,074,952	+		GFF4157	0.76	+1.3
1,074,952	+		GFF4157	0.76	+0.6
1,074,953	-		GFF4157	0.77	+1.8
1,075,098	+				+0.2
1,075,293	+		GFF4158	0.83	-1.7
1,075,293	+		GFF4158	0.83	+0.8
1,075,293	+		GFF4158	0.83	-0.0
1,075,293	+		GFF4158	0.83	+0.3
1,075,294	-		GFF4158	0.83	-1.0
1,075,294	-		GFF4158	0.83	+1.4
1,075,294	-		GFF4158	0.83	-0.6
1,075,294	-		GFF4158	0.83	+0.3
1,075,297	+		GFF4158	0.84	-0.1
1,075,298	-		GFF4158	0.85	-0.3
1,075,298	-		GFF4158	0.85	-0.4
1,075,298	-		GFF4158	0.85	+1.3
1,075,358	+				-0.3
1,075,359	-				-1.2
1,075,359	-				+0.0
1,075,392	+				-0.1
1,075,392	+				-1.3
1,075,392	+				+0.5
1,075,392	+				-0.1
1,075,392	+				+0.3
1,075,392	+				-0.7
1,075,392	+				-0.7
1,075,392	+				+0.0
1,075,392	+				-0.7
1,075,392	+				-0.4
1,075,392	+				-0.5
1,075,393	-				-0.3
1,075,404	+				+0.1
1,075,405	-				+0.8
1,075,405	-				+0.7
1,075,405	-				+1.5
1,075,435	+				+0.8
1,075,436	-				-0.1
1,075,436	-				-0.7
1,075,437	+				+0.4
1,075,437	+				-0.0
1,075,444	-				+0.1
1,075,450	+				+0.4
1,075,451	-				+0.2
1,075,453	-				+0.5
1,075,481	+				-1.0
1,075,589	+				-0.0
1,075,589	+				+0.4
1,075,589	+				-0.2
1,075,590	-				+0.6
1,075,590	-				+0.6
1,075,596	+				+1.0
1,075,673	+				-1.2
1,075,673	+				-0.1
1,075,674	-				+0.6
1,075,674	-				+0.3
1,075,902	+		GFF4159	0.55	+0.5
1,075,902	+		GFF4159	0.55	-0.2
1,075,903	-		GFF4159	0.55	-0.6
1,075,903	-		GFF4159	0.55	-0.3
1,075,988	+		GFF4159	0.79	-0.2
1,075,989	-		GFF4159	0.80	+0.5
1,076,019	-		GFF4159	0.88	+1.0
1,076,091	+				-0.5
1,076,092	-				-0.3
1,076,092	-				-0.3
1,076,177	+				+0.8
1,076,177	+				+3.3
1,076,177	+				+1.0
1,076,177	+				+0.3
1,076,177	+				-0.0
1,076,178	-				-0.3
1,076,178	-				-0.5
1,076,178	-				+0.3
1,076,178	-				-0.0
1,076,178	-				-0.3
1,076,178	-				+0.2
1,076,294	-				+1.3
1,076,294	-				+0.4
1,076,300	+				+0.7