Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4148

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,058,640	-				+0.0
1,058,640	-				-0.1
1,058,652	-				-0.7
1,058,713	+				-0.7
1,058,714	-				+0.0
1,058,714	-				+0.3
1,058,763	+				-0.3
1,058,778	+				+0.3
1,058,779	-				-1.1
1,058,798	+				-1.4
1,058,798	+				-1.2
1,058,798	+				-0.0
1,058,798	+				+1.3
1,058,798	+				-0.2
1,058,798	+				+2.4
1,058,799	-				+0.6
1,058,799	-				-0.1
1,058,799	-				-0.6
1,058,799	-				+1.0
1,058,799	-				-0.8
1,058,844	+				+0.5
1,058,845	-				+1.4
1,058,897	+				-0.3
1,058,897	+				+3.1
1,058,898	-				-0.9
1,058,898	-				+0.8
1,058,989	+				-0.3
1,058,989	+				+0.4
1,058,989	+				-0.4
1,058,989	+				-0.5
1,058,990	-				-0.2
1,058,990	-				-0.2
1,059,045	-				-1.2
1,059,045	-				-0.3
1,059,089	+				-1.0
1,059,090	+				-0.1
1,059,090	+				+0.9
1,059,090	-				+0.3
1,059,090	-				+0.4
1,059,090	-				-0.6
1,059,221	-				-0.5
1,059,331	+				+0.9
1,059,331	+				-0.2
1,059,419	+				-0.7
1,059,419	+				-0.2
1,059,419	+				-0.4
1,059,419	+				-0.3
1,059,419	+				-0.5
1,059,419	+				+0.5
1,059,420	-				+1.0
1,059,420	-				-0.5
1,059,420	-				+0.1
1,059,420	-				+1.0
1,059,442	+				-0.1
1,059,442	+				-1.3
1,059,442	+				+0.5
1,059,442	+				-0.3
1,059,443	-				-0.0
1,059,443	-				+0.4
1,059,459	+				-0.7
1,059,460	-				-0.8
1,059,460	-				+7.8
1,059,532	+				-0.7
1,059,532	+				+0.6
1,059,740	+		GFF4148	0.20	+0.2
1,059,983	+		GFF4148	0.60	+0.1
1,059,983	+		GFF4148	0.60	+0.5
1,059,984	-		GFF4148	0.60	+0.1
1,059,984	-		GFF4148	0.60	+1.9
1,060,191	-				+0.0
1,060,214	+				-0.4
1,060,214	+				-0.4
1,060,214	+				-0.1
1,060,214	+				+1.1
1,060,214	+				+0.4
1,060,214	-				+1.3
1,060,215	-				-0.4
1,060,215	-				-0.3
1,060,215	-				-0.2
1,060,215	-				+1.3
1,060,215	-				+0.9
1,060,215	-				-0.3
1,060,215	-				+0.9
1,060,215	-				-0.5
1,060,226	+				+0.7
1,060,226	+				+0.7
1,060,226	+				-1.4
1,060,226	+				-0.3
1,060,226	+				-1.3
1,060,226	+				-0.6
1,060,226	+				+0.3
1,060,226	+				-2.1
1,060,227	-				-0.9
1,060,227	-				-0.0
1,060,227	-				+1.3
1,060,227	-				+0.0
1,060,227	-				+1.3
1,060,227	-				+0.2
1,060,320	+				-0.1
1,060,321	-				-2.3
1,060,321	-				-0.6
1,060,385	+				+1.7
1,060,385	+				-0.9
1,060,385	+				-0.2
1,060,386	-				-0.3
1,060,386	-				-0.2
1,060,386	-				+0.6
1,060,386	-				-0.1
1,060,386	-				-0.1
1,060,403	-				-0.9
1,060,469	+				+0.1
1,060,469	+				+1.2
1,060,469	+				-0.6
1,060,469	+				+1.2
1,060,470	-				+4.7
1,060,470	-				+0.7
1,060,514	+				+0.5
1,060,515	-				-0.5
1,060,794	+				+1.6
1,060,794	+				-0.2
1,060,795	-				-1.1
1,060,849	-				-0.5
1,060,849	-				-2.0
1,060,849	-				-0.1
1,060,951	+				-0.6
1,060,951	+				+2.6
1,060,951	+				-0.1
1,060,952	-				+0.2
1,060,952	-				+0.2
1,061,049	+				-0.2
1,061,049	+				-3.6
1,061,049	+				+0.0
1,061,050	-				-0.5
1,061,177	-				+0.2