Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4107

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,017,174	+				-0.8
1,017,174	+				-0.4
1,017,174	+				-0.3
1,017,175	-				-0.1
1,017,175	-				-1.3
1,017,223	+				-0.7
1,017,223	+				-0.1
1,017,223	+				+0.5
1,017,225	+				+0.1
1,017,225	+				-1.3
1,017,382	+		GFF4106	0.15	-0.3
1,017,382	+		GFF4106	0.15	+0.5
1,017,382	+		GFF4106	0.15	-0.2
1,017,382	+		GFF4106	0.15	-0.2
1,017,382	+		GFF4106	0.15	-0.7
1,017,382	+		GFF4106	0.15	+1.5
1,017,383	-		GFF4106	0.15	-0.3
1,017,383	-		GFF4106	0.15	-0.5
1,017,383	-		GFF4106	0.15	-0.3
1,017,383	-		GFF4106	0.15	+0.8
1,017,383	-		GFF4106	0.15	-0.4
1,017,383	-		GFF4106	0.15	+0.3
1,017,411	+		GFF4106	0.20	+0.9
1,017,411	+		GFF4106	0.20	-1.0
1,017,411	+		GFF4106	0.20	-1.5
1,017,411	+		GFF4106	0.20	-0.8
1,017,412	-		GFF4106	0.20	-0.1
1,017,412	-		GFF4106	0.20	+0.7
1,017,412	-		GFF4106	0.20	+0.2
1,017,412	-		GFF4106	0.20	-0.3
1,017,412	-		GFF4106	0.20	-1.3
1,017,687	+		GFF4106	0.65	+1.3
1,017,688	-		GFF4106	0.66	-0.7
1,017,780	+		GFF4106	0.81	-0.7
1,017,780	+		GFF4106	0.81	-0.1
1,017,780	+		GFF4106	0.81	-0.7
1,017,781	-		GFF4106	0.81	-0.3
1,017,781	-		GFF4106	0.81	-0.3
1,017,781	-		GFF4106	0.81	-0.6
1,017,781	-		GFF4106	0.81	-0.1
1,017,781	-		GFF4106	0.81	+0.2
1,017,781	-		GFF4106	0.81	+0.8
1,017,781	-		GFF4106	0.81	-0.1
1,017,810	+		GFF4106	0.86	-0.1
1,017,810	+		GFF4106	0.86	+0.4
1,017,810	+		GFF4106	0.86	+0.1
1,017,810	+		GFF4106	0.86	+1.0
1,017,810	+		GFF4106	0.86	-0.2
1,017,811	-		GFF4106	0.86	-1.3
1,017,912	+				+0.0
1,017,912	+				+0.9
1,017,912	+				-0.9
1,017,913	-				-0.7
1,017,950	+				-0.3
1,017,955	+				-0.7
1,017,955	+				+0.9
1,017,955	+				-1.3
1,017,955	+				-0.3
1,017,955	+				+0.9
1,017,955	+				+1.7
1,017,955	+				+0.3
1,017,955	+				+1.0
1,017,956	-				-0.5
1,017,956	-				+0.5
1,017,956	-				-0.1
1,017,956	-				+0.7
1,017,956	-				+1.3
1,017,956	-				-0.3
1,017,972	-				-0.1
1,017,972	-				+0.5
1,017,986	+				+0.3
1,017,986	+				+0.9
1,017,986	+				-0.5
1,017,987	-				-0.3
1,017,987	-				+0.9
1,017,987	-				+0.4
1,018,273	+		GFF4107	0.11	+0.7
1,018,273	+		GFF4107	0.11	-0.6
1,018,273	+		GFF4107	0.11	-0.1
1,018,273	+		GFF4107	0.11	+0.2
1,018,273	+		GFF4107	0.11	+0.0
1,018,273	+		GFF4107	0.11	+0.2
1,018,274	-		GFF4107	0.11	+0.0
1,018,274	-		GFF4107	0.11	-0.0
1,018,309	+		GFF4107	0.13	-1.7
1,018,309	+		GFF4107	0.13	+0.0
1,018,310	-		GFF4107	0.13	+0.0
1,018,310	-		GFF4107	0.13	-0.7
1,018,310	-		GFF4107	0.13	+0.4
1,018,310	-		GFF4107	0.13	-0.0
1,018,310	-		GFF4107	0.13	-0.2
1,018,310	-		GFF4107	0.13	+0.1
1,018,402	+		GFF4107	0.18	-0.6
1,018,402	+		GFF4107	0.18	-0.3
1,018,402	+		GFF4107	0.18	-0.4
1,018,403	-		GFF4107	0.18	-0.3
1,018,403	-		GFF4107	0.18	+0.3
1,018,403	-		GFF4107	0.18	-0.2
1,018,486	+		GFF4107	0.22	+0.7
1,018,486	+		GFF4107	0.22	-0.7
1,018,486	+		GFF4107	0.22	-0.1
1,018,486	+		GFF4107	0.22	-0.2
1,018,486	+		GFF4107	0.22	+1.3
1,018,486	+		GFF4107	0.22	-0.7
1,018,486	+		GFF4107	0.22	-0.3
1,018,487	-		GFF4107	0.22	-0.3
1,018,487	-		GFF4107	0.22	-0.9
1,018,487	-		GFF4107	0.22	+0.1
1,018,487	-		GFF4107	0.22	-0.2
1,018,487	-		GFF4107	0.22	-0.1
1,018,487	-		GFF4107	0.22	-0.7
1,018,487	-		GFF4107	0.22	-0.6
1,018,636	+		GFF4107	0.30	-1.1
1,018,637	-		GFF4107	0.30	+0.2
1,018,861	+		GFF4107	0.41	+0.0
1,018,861	+		GFF4107	0.41	+0.5
1,018,861	+		GFF4107	0.41	-0.1
1,018,862	-		GFF4107	0.41	+1.3
1,018,862	-		GFF4107	0.41	+0.3
1,018,862	-		GFF4107	0.41	+0.9
1,018,862	-		GFF4107	0.41	-1.3
1,018,915	+		GFF4107	0.44	-0.3
1,018,915	+		GFF4107	0.44	+0.2
1,019,017	+		GFF4107	0.49	+0.4
1,019,017	+		GFF4107	0.49	+0.1
1,019,017	+		GFF4107	0.49	-0.3
1,019,018	-		GFF4107	0.49	+0.4
1,019,018	-		GFF4107	0.49	-0.0
1,019,018	-		GFF4107	0.49	+1.3
1,019,018	-		GFF4107	0.49	+1.3
1,019,018	-		GFF4107	0.49	+0.8
1,019,018	-		GFF4107	0.49	-0.3
1,019,026	+		GFF4107	0.49	+0.0
1,019,027	-		GFF4107	0.49	-0.7
1,019,027	-		GFF4107	0.49	+0.3
1,019,080	+		GFF4107	0.52	+0.9
1,019,080	+		GFF4107	0.52	+0.2
1,019,137	+		GFF4107	0.55	+0.6
1,019,137	+		GFF4107	0.55	-0.3
1,019,137	+		GFF4107	0.55	-0.0
1,019,138	-		GFF4107	0.55	+0.3
1,019,138	-		GFF4107	0.55	+0.2
1,019,278	+		GFF4107	0.62	-0.3
1,019,548	+		GFF4107	0.75	+1.3
1,019,548	+		GFF4107	0.75	-1.0
1,019,549	-		GFF4107	0.75	-0.1
1,019,549	-		GFF4107	0.75	-0.4
1,019,549	-		GFF4107	0.75	+0.3
1,019,549	-		GFF4107	0.75	-0.5
1,019,549	-		GFF4107	0.75	+0.9
1,019,549	-		GFF4107	0.75	+0.4
1,019,572	+		GFF4107	0.77	+2.3
1,019,572	+		GFF4107	0.77	-1.1
1,019,572	+		GFF4107	0.77	-0.5
1,019,573	-		GFF4107	0.77	+0.2
1,019,575	+		GFF4107	0.77	+0.4
1,019,575	+		GFF4107	0.77	-0.1
1,019,575	+		GFF4107	0.77	-1.0
1,019,576	-		GFF4107	0.77	+0.5
1,019,576	-		GFF4107	0.77	-0.3
1,019,618	-		GFF4107	0.79	+0.1
1,020,375	+				-0.2
1,020,375	+				-0.4
1,020,375	+				+1.9
1,020,375	+				-0.8
1,020,376	-				-1.5
1,020,376	-				+0.3
1,020,376	-				+1.5
1,020,376	-				+0.0
1,020,376	-				+1.2
1,020,376	-				-0.6
1,020,376	-				+0.3
1,020,376	-				-1.7
1,020,376	-				-0.8
1,020,376	-				+0.0
1,020,376	-				-0.5
1,020,376	-				-0.5
1,020,376	-				+0.6
1,020,538	-		GFF4108	0.17	+1.3
1,020,606	+		GFF4108	0.23	-0.3
1,020,606	+		GFF4108	0.23	+0.3
1,020,621	+		GFF4108	0.24	-1.0
1,020,621	+		GFF4108	0.24	-1.3
1,020,621	+		GFF4108	0.24	-1.6
1,020,621	+		GFF4108	0.24	+0.7
1,020,622	-		GFF4108	0.24	+2.2
1,020,680	+		GFF4108	0.29	-0.3
1,020,680	+		GFF4108	0.29	+0.2
1,020,680	+		GFF4108	0.29	-0.7
1,020,680	+		GFF4108	0.29	-0.7
1,020,684	+		GFF4108	0.29	+0.7
1,020,684	+		GFF4108	0.29	-0.6
1,020,684	+		GFF4108	0.29	+0.7
1,020,684	+		GFF4108	0.29	-1.0
1,020,684	+		GFF4108	0.29	+0.0
1,020,684	+		GFF4108	0.29	-0.0
1,020,685	-		GFF4108	0.29	-0.7
1,020,685	-		GFF4108	0.29	+0.4
1,020,685	-		GFF4108	0.29	+1.6
1,020,685	-		GFF4108	0.29	-1.7
1,020,685	-		GFF4108	0.29	+0.3
1,020,685	-		GFF4108	0.29	-0.7
1,020,685	-		GFF4108	0.29	+0.8
1,020,685	-		GFF4108	0.29	+0.7
1,020,685	-		GFF4108	0.29	+3.1
1,020,685	-		GFF4108	0.29	-1.4
1,020,870	+		GFF4108	0.44	-0.5
1,020,870	+		GFF4108	0.44	+0.1
1,020,871	-		GFF4108	0.45	-0.7
1,020,871	-		GFF4108	0.45	-0.7
1,020,936	+		GFF4108	0.50	+0.2
1,020,937	-		GFF4108	0.50	-0.7
1,020,937	-		GFF4108	0.50	-0.0
1,020,937	-		GFF4108	0.50	+2.9
1,020,937	-		GFF4108	0.50	+0.1
1,020,948	+		GFF4108	0.51	-0.3
1,020,948	+		GFF4108	0.51	-0.3
1,020,948	+		GFF4108	0.51	+0.3
1,020,948	+		GFF4108	0.51	+0.7
1,020,948	+		GFF4108	0.51	+1.6
1,020,948	+		GFF4108	0.51	+2.0
1,020,948	+		GFF4108	0.51	-0.2
1,020,948	+		GFF4108	0.51	-0.6
1,020,948	+		GFF4108	0.51	-0.4
1,020,949	-		GFF4108	0.51	-0.1
1,020,949	-		GFF4108	0.51	+0.2