Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4090

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
1,002,646	-				-0.0
1,002,702	+				-0.6
1,002,718	-				-0.1
1,002,718	-				-0.7
1,003,030	-		GFF4089	0.49	-0.5
1,003,030	-		GFF4089	0.49	-1.9
1,003,471	+		GFF4090	0.16	+0.9
1,003,472	-		GFF4090	0.16	-0.8
1,003,472	-		GFF4090	0.16	-1.0
1,003,698	-				+0.3
1,004,088	+		GFF4091	0.50	-0.3
1,004,089	-		GFF4091	0.50	-1.0
1,004,323	-		GFF4091	0.79	+0.1
1,004,540	+		GFF4092	0.14	+0.2
1,004,540	+		GFF4092	0.14	-1.7
1,004,541	-		GFF4092	0.15	-1.4