Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4029 and GFF4030 are separated by 13 nucleotides GFF4030 and GFF4031 are separated by 7 nucleotides
GFF4029 - Aerotaxis sensor receptor protein, at 942,465 to 944,009
GFF4029
GFF4030 - sensory box histidine kinase, at 944,023 to 945,633
GFF4030
GFF4031 - Phytoene synthase (EC 2.5.1.32), at 945,641 to 946,492
GFF4031
Position (kb) 944
945
946 Strain fitness (log2 ratio) -1
0
1 at 944.389 kb on + strand, within GFF4030 at 944.390 kb on - strand, within GFF4030 at 944.390 kb on - strand, within GFF4030 at 944.390 kb on - strand, within GFF4030 at 944.390 kb on - strand, within GFF4030 at 944.450 kb on + strand, within GFF4030 at 944.450 kb on + strand, within GFF4030 at 944.450 kb on + strand, within GFF4030 at 944.451 kb on - strand, within GFF4030 at 944.451 kb on - strand, within GFF4030 at 944.545 kb on + strand, within GFF4030 at 944.546 kb on - strand, within GFF4030 at 944.803 kb on + strand, within GFF4030 at 944.803 kb on + strand, within GFF4030 at 944.803 kb on - strand, within GFF4030 at 944.804 kb on - strand, within GFF4030 at 944.890 kb on + strand, within GFF4030 at 944.891 kb on - strand, within GFF4030 at 944.915 kb on - strand, within GFF4030 at 945.019 kb on + strand, within GFF4030 at 945.019 kb on + strand, within GFF4030 at 945.283 kb on + strand, within GFF4030 at 945.284 kb on - strand, within GFF4030 at 945.284 kb on - strand, within GFF4030 at 945.284 kb on - strand, within GFF4030 at 945.488 kb on - strand at 945.642 kb on + strand at 945.954 kb on + strand, within GFF4031 at 945.955 kb on - strand, within GFF4031 at 946.065 kb on + strand, within GFF4031 at 946.065 kb on + strand, within GFF4031 at 946.114 kb on - strand, within GFF4031 at 946.140 kb on + strand, within GFF4031 at 946.141 kb on - strand, within GFF4031 at 946.324 kb on - strand, within GFF4031 at 946.405 kb on - strand, within GFF4031 at 946.470 kb on + strand at 946.470 kb on + strand at 946.470 kb on + strand at 946.556 kb on - strand at 946.556 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 944,389 + GFF4030 0.23 -0.4 944,390 - GFF4030 0.23 +0.3 944,390 - GFF4030 0.23 -0.9 944,390 - GFF4030 0.23 +1.0 944,390 - GFF4030 0.23 +0.9 944,450 + GFF4030 0.27 -0.5 944,450 + GFF4030 0.27 +0.1 944,450 + GFF4030 0.27 +1.3 944,451 - GFF4030 0.27 +1.5 944,451 - GFF4030 0.27 +1.1 944,545 + GFF4030 0.32 +0.3 944,546 - GFF4030 0.32 -0.7 944,803 + GFF4030 0.48 +0.7 944,803 + GFF4030 0.48 -0.6 944,803 - GFF4030 0.48 -0.3 944,804 - GFF4030 0.48 -0.4 944,890 + GFF4030 0.54 +0.1 944,891 - GFF4030 0.54 +1.5 944,915 - GFF4030 0.55 +0.3 945,019 + GFF4030 0.62 -0.3 945,019 + GFF4030 0.62 -0.4 945,283 + GFF4030 0.78 +1.3 945,284 - GFF4030 0.78 -0.0 945,284 - GFF4030 0.78 +0.0 945,284 - GFF4030 0.78 -1.5 945,488 - -1.1 945,642 + +1.0 945,954 + GFF4031 0.37 +0.5 945,955 - GFF4031 0.37 +0.6 946,065 + GFF4031 0.50 +0.6 946,065 + GFF4031 0.50 +0.9 946,114 - GFF4031 0.56 +1.7 946,140 + GFF4031 0.59 +1.6 946,141 - GFF4031 0.59 +0.7 946,324 - GFF4031 0.80 +0.3 946,405 - GFF4031 0.90 +0.8 946,470 + +1.3 946,470 + +1.5 946,470 + +0.1 946,556 - +1.5 946,556 - -0.5
Or see this region's nucleotide sequence