Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3993 and GFF3994 overlap by 11 nucleotides GFF3994 and GFF3995 overlap by 17 nucleotides GFF3995 and GFF3996 are separated by 8 nucleotides GFF3996 and GFF3997 overlap by 4 nucleotides
GFF3993 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 908,728 to 910,107
GFF3993
GFF3994 - Dethiobiotin synthetase (EC 6.3.3.3), at 910,097 to 910,780
GFF3994
GFF3995 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 910,764 to 911,984
GFF3995
GFF3996 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 911,993 to 912,949
GFF3996
GFF3997 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 912,946 to 913,935
GFF3997
Position (kb) 910
911
912 Strain fitness (log2 ratio) -1
0
1 at 909.964 kb on + strand, within GFF3993 at 909.964 kb on + strand, within GFF3993 at 910.908 kb on + strand, within GFF3995 at 910.908 kb on + strand, within GFF3995 at 910.968 kb on + strand, within GFF3995 at 911.073 kb on + strand, within GFF3995 at 911.074 kb on - strand, within GFF3995 at 911.088 kb on + strand, within GFF3995 at 911.469 kb on + strand, within GFF3995 at 911.469 kb on + strand, within GFF3995 at 911.469 kb on + strand, within GFF3995 at 911.470 kb on - strand, within GFF3995 at 911.470 kb on - strand, within GFF3995 at 911.565 kb on + strand, within GFF3995 at 911.565 kb on + strand, within GFF3995 at 911.566 kb on - strand, within GFF3995 at 911.566 kb on - strand, within GFF3995 at 911.572 kb on - strand, within GFF3995 at 912.104 kb on + strand, within GFF3996 at 912.105 kb on - strand, within GFF3996 at 912.537 kb on - strand, within GFF3996 at 912.812 kb on + strand, within GFF3996 at 912.813 kb on - strand, within GFF3996 at 912.813 kb on - strand, within GFF3996 at 912.813 kb on - strand, within GFF3996 at 912.813 kb on - strand, within GFF3996 at 912.888 kb on + strand at 912.889 kb on - strand at 912.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 909,964 + GFF3993 0.90 +0.3 909,964 + GFF3993 0.90 -0.3 910,908 + GFF3995 0.12 +1.6 910,908 + GFF3995 0.12 +0.6 910,968 + GFF3995 0.17 +0.3 911,073 + GFF3995 0.25 +0.8 911,074 - GFF3995 0.25 +0.7 911,088 + GFF3995 0.27 +0.1 911,469 + GFF3995 0.58 -0.0 911,469 + GFF3995 0.58 -1.0 911,469 + GFF3995 0.58 -1.1 911,470 - GFF3995 0.58 -0.3 911,470 - GFF3995 0.58 +0.3 911,565 + GFF3995 0.66 +0.9 911,565 + GFF3995 0.66 -0.4 911,566 - GFF3995 0.66 +1.3 911,566 - GFF3995 0.66 -0.9 911,572 - GFF3995 0.66 +0.1 912,104 + GFF3996 0.12 +0.5 912,105 - GFF3996 0.12 +1.3 912,537 - GFF3996 0.57 +1.0 912,812 + GFF3996 0.86 +0.3 912,813 - GFF3996 0.86 +0.4 912,813 - GFF3996 0.86 -0.3 912,813 - GFF3996 0.86 -1.5 912,813 - GFF3996 0.86 +1.3 912,888 + -0.5 912,889 - -0.6 912,889 - +0.6
Or see this region's nucleotide sequence