Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3872 and GFF3873 are separated by 229 nucleotides GFF3873 and GFF3874 are separated by 2 nucleotides GFF3874 and GFF3875 overlap by 4 nucleotides
GFF3872 - exported protein, conserved, at 784,761 to 786,809
GFF3872
GFF3873 - ABC-type transport system involved in resistance to organic solvents, permease component, at 787,039 to 788,178
GFF3873
GFF3874 - L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1), at 788,181 to 788,966
GFF3874
GFF3875 - Paraquat-inducible protein B, at 788,963 to 790,000
GFF3875
Position (kb) 787
788
789 Strain fitness (log2 ratio) -1
0
1
2
3 at 786.266 kb on - strand, within GFF3872 at 786.852 kb on + strand at 786.942 kb on + strand at 786.977 kb on + strand at 786.978 kb on - strand at 787.606 kb on + strand, within GFF3873 at 787.606 kb on + strand, within GFF3873 at 787.607 kb on - strand, within GFF3873 at 787.607 kb on - strand, within GFF3873 at 787.607 kb on - strand, within GFF3873 at 787.607 kb on - strand, within GFF3873 at 787.648 kb on + strand, within GFF3873 at 787.648 kb on + strand, within GFF3873 at 787.848 kb on + strand, within GFF3873 at 787.924 kb on + strand, within GFF3873 at 787.924 kb on + strand, within GFF3873 at 787.925 kb on - strand, within GFF3873 at 787.925 kb on - strand, within GFF3873 at 787.945 kb on + strand, within GFF3873 at 787.946 kb on - strand, within GFF3873 at 787.946 kb on - strand, within GFF3873 at 787.946 kb on - strand, within GFF3873 at 787.946 kb on - strand, within GFF3873 at 787.952 kb on - strand, within GFF3873 at 787.952 kb on - strand, within GFF3873 at 788.015 kb on - strand, within GFF3873 at 788.015 kb on - strand, within GFF3873 at 788.015 kb on - strand, within GFF3873 at 788.400 kb on + strand, within GFF3874 at 788.400 kb on + strand, within GFF3874 at 788.400 kb on + strand, within GFF3874 at 789.059 kb on + strand at 789.059 kb on + strand at 789.060 kb on - strand at 789.060 kb on - strand at 789.060 kb on - strand at 789.089 kb on + strand, within GFF3875 at 789.089 kb on + strand, within GFF3875 at 789.089 kb on + strand, within GFF3875 at 789.089 kb on + strand, within GFF3875
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 786,266 - GFF3872 0.73 -0.3 786,852 + -0.3 786,942 + -1.0 786,977 + -0.9 786,978 - -0.4 787,606 + GFF3873 0.50 +0.1 787,606 + GFF3873 0.50 +0.7 787,607 - GFF3873 0.50 -1.2 787,607 - GFF3873 0.50 -1.3 787,607 - GFF3873 0.50 -0.5 787,607 - GFF3873 0.50 +0.1 787,648 + GFF3873 0.53 +0.8 787,648 + GFF3873 0.53 -0.7 787,848 + GFF3873 0.71 -1.1 787,924 + GFF3873 0.78 +1.5 787,924 + GFF3873 0.78 -0.6 787,925 - GFF3873 0.78 +0.4 787,925 - GFF3873 0.78 -0.7 787,945 + GFF3873 0.79 -0.5 787,946 - GFF3873 0.80 +1.3 787,946 - GFF3873 0.80 -0.7 787,946 - GFF3873 0.80 -0.5 787,946 - GFF3873 0.80 -0.3 787,952 - GFF3873 0.80 +0.6 787,952 - GFF3873 0.80 +0.9 788,015 - GFF3873 0.86 -0.2 788,015 - GFF3873 0.86 -0.1 788,015 - GFF3873 0.86 -0.2 788,400 + GFF3874 0.28 +3.0 788,400 + GFF3874 0.28 -0.5 788,400 + GFF3874 0.28 +0.7 789,059 + +1.3 789,059 + -0.4 789,060 - -0.4 789,060 - +3.0 789,060 - +0.5 789,089 + GFF3875 0.12 +0.4 789,089 + GFF3875 0.12 +0.4 789,089 + GFF3875 0.12 -0.7 789,089 + GFF3875 0.12 -0.0
Or see this region's nucleotide sequence