Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3865 and GFF3866 are separated by 59 nucleotides GFF3866 and GFF3867 are separated by 22 nucleotides
GFF3865 - Salicylate hydroxylase (EC 1.14.13.1), at 776,917 to 778,068
GFF3865
GFF3866 - Transcriptional regulator, AraC family, at 778,128 to 779,105
GFF3866
GFF3867 - Plasmid replication/partition related protein, at 779,128 to 779,967
GFF3867
Position (kb) 778
779
780 Strain fitness (log2 ratio) -1
0
1
2 at 777.278 kb on + strand, within GFF3865 at 777.278 kb on + strand, within GFF3865 at 777.422 kb on + strand, within GFF3865 at 777.542 kb on + strand, within GFF3865 at 777.682 kb on + strand, within GFF3865 at 777.682 kb on + strand, within GFF3865 at 777.682 kb on + strand, within GFF3865 at 777.682 kb on + strand, within GFF3865 at 777.803 kb on + strand, within GFF3865 at 777.803 kb on + strand, within GFF3865 at 777.803 kb on + strand, within GFF3865 at 777.804 kb on - strand, within GFF3865 at 777.804 kb on - strand, within GFF3865 at 777.842 kb on + strand, within GFF3865 at 777.842 kb on + strand, within GFF3865 at 777.842 kb on + strand, within GFF3865 at 777.933 kb on - strand, within GFF3865 at 777.933 kb on - strand, within GFF3865 at 778.240 kb on + strand, within GFF3866 at 778.328 kb on - strand, within GFF3866 at 778.951 kb on + strand, within GFF3866 at 778.952 kb on - strand, within GFF3866 at 779.933 kb on + strand at 779.933 kb on + strand at 779.934 kb on - strand at 779.934 kb on - strand at 779.934 kb on - strand at 780.007 kb on + strand at 780.007 kb on + strand at 780.008 kb on - strand at 780.071 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 777,278 + GFF3865 0.31 +1.4 777,278 + GFF3865 0.31 -0.6 777,422 + GFF3865 0.44 -1.5 777,542 + GFF3865 0.54 -0.0 777,682 + GFF3865 0.66 -1.4 777,682 + GFF3865 0.66 -0.7 777,682 + GFF3865 0.66 +0.1 777,682 + GFF3865 0.66 -0.2 777,803 + GFF3865 0.77 -0.3 777,803 + GFF3865 0.77 -0.3 777,803 + GFF3865 0.77 +2.4 777,804 - GFF3865 0.77 +0.1 777,804 - GFF3865 0.77 +0.5 777,842 + GFF3865 0.80 -0.2 777,842 + GFF3865 0.80 -0.1 777,842 + GFF3865 0.80 +1.4 777,933 - GFF3865 0.88 -1.1 777,933 - GFF3865 0.88 -0.2 778,240 + GFF3866 0.11 -0.3 778,328 - GFF3866 0.20 -0.7 778,951 + GFF3866 0.84 +0.2 778,952 - GFF3866 0.84 -1.5 779,933 + -0.3 779,933 + +0.3 779,934 - -0.7 779,934 - +0.3 779,934 - -0.1 780,007 + -1.5 780,007 + +0.8 780,008 - -0.1 780,071 + -0.1
Or see this region's nucleotide sequence