Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3858 and GFF3859 are separated by 75 nucleotides GFF3859 and GFF3860 are separated by 104 nucleotides GFF3860 and GFF3861 are separated by 17 nucleotides
GFF3858 - TcuR: regulates tcuABC genes used in utilization of tricarballylate, at 770,770 to 771,726
GFF3858
GFF3859 - probable ring-cleaving dioxygenase protein, at 771,802 to 772,644
GFF3859
GFF3860 - Transcriptional regulator, IclR family, at 772,749 to 773,540
GFF3860
GFF3861 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 773,558 to 774,064
GFF3861
Position (kb) 771
772
773 Strain fitness (log2 ratio) -1
0
1
2 at 770.903 kb on + strand, within GFF3858 at 770.904 kb on - strand, within GFF3858 at 770.904 kb on - strand, within GFF3858 at 770.904 kb on - strand, within GFF3858 at 770.909 kb on + strand, within GFF3858 at 770.909 kb on + strand, within GFF3858 at 770.910 kb on - strand, within GFF3858 at 770.910 kb on - strand, within GFF3858 at 771.326 kb on + strand, within GFF3858 at 771.326 kb on + strand, within GFF3858 at 771.326 kb on + strand, within GFF3858 at 771.326 kb on + strand, within GFF3858 at 771.327 kb on - strand, within GFF3858 at 771.533 kb on + strand, within GFF3858 at 771.533 kb on + strand, within GFF3858 at 771.705 kb on - strand at 771.705 kb on - strand at 771.763 kb on - strand at 771.764 kb on + strand at 771.765 kb on - strand at 771.765 kb on - strand at 771.965 kb on + strand, within GFF3859 at 771.966 kb on + strand, within GFF3859 at 771.966 kb on - strand, within GFF3859 at 771.966 kb on - strand, within GFF3859 at 772.040 kb on + strand, within GFF3859 at 772.041 kb on - strand, within GFF3859 at 772.041 kb on - strand, within GFF3859 at 772.787 kb on - strand at 773.324 kb on - strand, within GFF3860 at 773.362 kb on + strand, within GFF3860 at 773.363 kb on - strand, within GFF3860 at 773.392 kb on + strand, within GFF3860 at 773.392 kb on + strand, within GFF3860 at 773.393 kb on - strand, within GFF3860 at 773.393 kb on - strand, within GFF3860 at 773.633 kb on + strand, within GFF3861
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 770,903 + GFF3858 0.14 -0.5 770,904 - GFF3858 0.14 -0.6 770,904 - GFF3858 0.14 +0.2 770,904 - GFF3858 0.14 +0.8 770,909 + GFF3858 0.15 +0.2 770,909 + GFF3858 0.15 +1.3 770,910 - GFF3858 0.15 +0.1 770,910 - GFF3858 0.15 +0.1 771,326 + GFF3858 0.58 -0.1 771,326 + GFF3858 0.58 -0.8 771,326 + GFF3858 0.58 -0.1 771,326 + GFF3858 0.58 -1.7 771,327 - GFF3858 0.58 +0.1 771,533 + GFF3858 0.80 +1.0 771,533 + GFF3858 0.80 +0.4 771,705 - -1.2 771,705 - -0.9 771,763 - +2.0 771,764 + -0.6 771,765 - -0.4 771,765 - -0.6 771,965 + GFF3859 0.19 -0.5 771,966 + GFF3859 0.19 -0.0 771,966 - GFF3859 0.19 -0.4 771,966 - GFF3859 0.19 -0.7 772,040 + GFF3859 0.28 -0.7 772,041 - GFF3859 0.28 +0.3 772,041 - GFF3859 0.28 -0.0 772,787 - -0.5 773,324 - GFF3860 0.73 +0.3 773,362 + GFF3860 0.77 +0.4 773,363 - GFF3860 0.78 -0.4 773,392 + GFF3860 0.81 -0.5 773,392 + GFF3860 0.81 +0.6 773,393 - GFF3860 0.81 -0.2 773,393 - GFF3860 0.81 +0.1 773,633 + GFF3861 0.15 -1.0
Or see this region's nucleotide sequence