Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3848 and GFF3849 are separated by 10 nucleotides GFF3849 and GFF3850 overlap by 47 nucleotides GFF3850 and GFF3851 are separated by 110 nucleotides
GFF3848 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5), at 759,805 to 760,374
GFF3848
GFF3849 - Permease of the drug/metabolite transporter (DMT) superfamily, at 760,385 to 761,278
GFF3849
GFF3850 - Transcriptional regulator, LysR family, at 761,232 to 762,149
GFF3850
GFF3851 - Haloacetate dehalogenase H-1 (EC 3.8.1.3), at 762,260 to 763,171
GFF3851
Position (kb) 761
762
763 Strain fitness (log2 ratio) -1
0
1
2
3 at 760.475 kb on + strand, within GFF3849 at 760.638 kb on - strand, within GFF3849 at 761.099 kb on + strand, within GFF3849 at 761.099 kb on + strand, within GFF3849 at 761.147 kb on + strand, within GFF3849 at 761.147 kb on + strand, within GFF3849 at 761.147 kb on + strand, within GFF3849 at 761.147 kb on + strand, within GFF3849 at 761.148 kb on - strand, within GFF3849 at 761.401 kb on + strand, within GFF3850 at 761.401 kb on + strand, within GFF3850 at 761.401 kb on + strand, within GFF3850 at 761.402 kb on - strand, within GFF3850 at 761.402 kb on - strand, within GFF3850 at 761.689 kb on + strand, within GFF3850 at 761.689 kb on + strand, within GFF3850 at 762.677 kb on + strand, within GFF3851 at 762.677 kb on + strand, within GFF3851 at 762.678 kb on - strand, within GFF3851 at 762.678 kb on - strand, within GFF3851 at 762.678 kb on - strand, within GFF3851 at 762.710 kb on + strand, within GFF3851 at 762.782 kb on + strand, within GFF3851 at 763.088 kb on + strand at 763.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 760,475 + GFF3849 0.10 +1.6 760,638 - GFF3849 0.28 -0.5 761,099 + GFF3849 0.80 +0.2 761,099 + GFF3849 0.80 -0.2 761,147 + GFF3849 0.85 +0.3 761,147 + GFF3849 0.85 -0.2 761,147 + GFF3849 0.85 -1.0 761,147 + GFF3849 0.85 -1.0 761,148 - GFF3849 0.85 -1.0 761,401 + GFF3850 0.18 +0.5 761,401 + GFF3850 0.18 +0.2 761,401 + GFF3850 0.18 +0.3 761,402 - GFF3850 0.19 -0.0 761,402 - GFF3850 0.19 -0.7 761,689 + GFF3850 0.50 +0.7 761,689 + GFF3850 0.50 -0.4 762,677 + GFF3851 0.46 +0.3 762,677 + GFF3851 0.46 -0.3 762,678 - GFF3851 0.46 -1.7 762,678 - GFF3851 0.46 +0.7 762,678 - GFF3851 0.46 +0.3 762,710 + GFF3851 0.49 +3.6 762,782 + GFF3851 0.57 +0.3 763,088 + -0.6 763,088 + -0.5
Or see this region's nucleotide sequence