Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3794 and GFF3795 are separated by 143 nucleotides GFF3795 and GFF3796 overlap by 4 nucleotides
GFF3794 - Tricarboxylate transport protein TctC, at 694,265 to 695,257
GFF3794
GFF3795 - Auxin Efflux Carrier, at 695,401 to 696,372
GFF3795
GFF3796 - Transcriptional regulator ligR, LysR family, at 696,369 to 697,265
GFF3796
Position (kb) 695
696
697 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 694.652 kb on + strand, within GFF3794 at 694.653 kb on - strand, within GFF3794 at 694.653 kb on - strand, within GFF3794 at 694.835 kb on + strand, within GFF3794 at 694.836 kb on - strand, within GFF3794 at 694.836 kb on - strand, within GFF3794 at 694.836 kb on - strand, within GFF3794 at 695.021 kb on + strand, within GFF3794 at 695.021 kb on + strand, within GFF3794 at 695.022 kb on - strand, within GFF3794 at 695.022 kb on - strand, within GFF3794 at 695.022 kb on - strand, within GFF3794 at 695.022 kb on - strand, within GFF3794 at 695.434 kb on + strand at 695.434 kb on + strand at 695.434 kb on + strand at 695.435 kb on - strand at 695.435 kb on - strand at 695.435 kb on - strand at 695.435 kb on - strand at 695.593 kb on + strand, within GFF3795 at 695.593 kb on + strand, within GFF3795 at 695.594 kb on - strand, within GFF3795 at 695.689 kb on + strand, within GFF3795 at 695.689 kb on + strand, within GFF3795 at 695.690 kb on - strand, within GFF3795 at 695.690 kb on - strand, within GFF3795 at 695.690 kb on - strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.726 kb on - strand, within GFF3795 at 695.726 kb on - strand, within GFF3795 at 695.726 kb on - strand, within GFF3795 at 695.726 kb on - strand, within GFF3795 at 696.370 kb on + strand at 696.370 kb on + strand at 696.497 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 696.827 kb on - strand, within GFF3796 at 697.243 kb on + strand at 697.243 kb on + strand at 697.243 kb on + strand at 697.244 kb on - strand at 697.244 kb on - strand at 697.294 kb on + strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.298 kb on + strand at 697.298 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 694,652 + GFF3794 0.39 +0.5 694,653 - GFF3794 0.39 -0.2 694,653 - GFF3794 0.39 -0.7 694,835 + GFF3794 0.57 -0.3 694,836 - GFF3794 0.58 -0.4 694,836 - GFF3794 0.58 +0.8 694,836 - GFF3794 0.58 +0.2 695,021 + GFF3794 0.76 -0.1 695,021 + GFF3794 0.76 +0.8 695,022 - GFF3794 0.76 -0.7 695,022 - GFF3794 0.76 -0.5 695,022 - GFF3794 0.76 +0.1 695,022 - GFF3794 0.76 -1.1 695,434 + +3.2 695,434 + -0.6 695,434 + +0.1 695,435 - -0.7 695,435 - +1.0 695,435 - +2.4 695,435 - +1.2 695,593 + GFF3795 0.20 +0.8 695,593 + GFF3795 0.20 -0.8 695,594 - GFF3795 0.20 -0.5 695,689 + GFF3795 0.30 +0.1 695,689 + GFF3795 0.30 -0.5 695,690 - GFF3795 0.30 -2.2 695,690 - GFF3795 0.30 -0.3 695,690 - GFF3795 0.30 -1.1 695,725 + GFF3795 0.33 -0.1 695,725 + GFF3795 0.33 -0.0 695,725 + GFF3795 0.33 +0.3 695,725 + GFF3795 0.33 -1.1 695,725 + GFF3795 0.33 +0.5 695,725 + GFF3795 0.33 -0.8 695,725 + GFF3795 0.33 -0.5 695,726 - GFF3795 0.33 -1.1 695,726 - GFF3795 0.33 +0.3 695,726 - GFF3795 0.33 -0.1 695,726 - GFF3795 0.33 +0.5 696,370 + -1.0 696,370 + +0.7 696,497 - GFF3796 0.14 -1.3 696,827 - GFF3796 0.51 -0.3 696,827 - GFF3796 0.51 -0.8 696,827 - GFF3796 0.51 -1.0 696,827 - GFF3796 0.51 -1.7 696,827 - GFF3796 0.51 -1.3 697,243 + +0.2 697,243 + -2.6 697,243 + -2.0 697,244 - -0.3 697,244 - +0.0 697,294 + -0.8 697,295 - -0.6 697,295 - -0.7 697,295 - -0.6 697,295 - -0.4 697,295 - +1.3 697,298 + -0.6 697,298 + -0.7
Or see this region's nucleotide sequence