Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3660 and GFF3661 are separated by 46 nucleotides GFF3661 and GFF3662 overlap by 17 nucleotides GFF3662 and GFF3663 are separated by 68 nucleotides
GFF3660 - Methyl-accepting chemotaxis protein, at 544,624 to 545,310
GFF3660
GFF3661 - Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 545,357 to 546,142
GFF3661
GFF3662 - Anthranilate phosphoribosyltransferase like (EC 2.4.2.18), at 546,126 to 547,058
GFF3662
GFF3663 - Assimilatory nitrate reductase large subunit (EC:1.7.99.4), at 547,127 to 549,907
GFF3663
Position (kb) 546
547
548 Strain fitness (log2 ratio) -1
0
1
2
3 at 545.604 kb on + strand, within GFF3661 at 545.604 kb on + strand, within GFF3661 at 545.605 kb on - strand, within GFF3661 at 546.247 kb on + strand, within GFF3662 at 546.248 kb on - strand, within GFF3662 at 546.460 kb on + strand, within GFF3662 at 546.475 kb on + strand, within GFF3662 at 546.475 kb on + strand, within GFF3662 at 546.476 kb on - strand, within GFF3662 at 546.530 kb on + strand, within GFF3662 at 546.530 kb on + strand, within GFF3662 at 546.803 kb on - strand, within GFF3662 at 546.803 kb on - strand, within GFF3662 at 546.803 kb on - strand, within GFF3662 at 547.042 kb on + strand at 547.042 kb on + strand at 547.042 kb on + strand at 547.043 kb on - strand at 547.043 kb on - strand at 547.043 kb on - strand at 547.043 kb on - strand at 547.107 kb on + strand at 547.109 kb on + strand at 547.378 kb on - strand at 547.378 kb on - strand at 547.527 kb on + strand, within GFF3663 at 547.884 kb on + strand, within GFF3663 at 547.885 kb on - strand, within GFF3663 at 547.885 kb on - strand, within GFF3663
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 545,604 + GFF3661 0.31 -0.3 545,604 + GFF3661 0.31 -0.8 545,605 - GFF3661 0.32 -0.9 546,247 + GFF3662 0.13 -0.8 546,248 - GFF3662 0.13 +0.3 546,460 + GFF3662 0.36 +0.7 546,475 + GFF3662 0.37 -0.5 546,475 + GFF3662 0.37 +1.6 546,476 - GFF3662 0.38 -0.8 546,530 + GFF3662 0.43 -0.3 546,530 + GFF3662 0.43 -0.3 546,803 - GFF3662 0.73 -0.7 546,803 - GFF3662 0.73 -0.6 546,803 - GFF3662 0.73 -1.1 547,042 + -1.3 547,042 + -0.6 547,042 + -1.4 547,043 - -1.0 547,043 - -0.5 547,043 - -0.9 547,043 - +0.0 547,107 + +1.0 547,109 + -0.2 547,378 - -1.0 547,378 - -0.2 547,527 + GFF3663 0.14 +1.2 547,884 + GFF3663 0.27 +1.3 547,885 - GFF3663 0.27 +3.5 547,885 - GFF3663 0.27 -0.2
Or see this region's nucleotide sequence