Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF356 and GFF357 are separated by 155 nucleotides GFF357 and GFF358 are separated by 4 nucleotides
GFF356 - SAM-dependent methyltransferases, at 18,709 to 19,587
GFF356
GFF357 - Transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 19,743 to 20,930
GFF357
GFF358 - FIG074102: hypothetical protein, at 20,935 to 22,062
GFF358
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 18.871 kb on + strand, within GFF356 at 18.871 kb on + strand, within GFF356 at 18.871 kb on + strand, within GFF356 at 18.872 kb on - strand, within GFF356 at 18.872 kb on - strand, within GFF356 at 18.872 kb on - strand, within GFF356 at 18.872 kb on - strand, within GFF356 at 18.872 kb on - strand, within GFF356 at 18.982 kb on + strand, within GFF356 at 19.411 kb on + strand, within GFF356 at 19.411 kb on + strand, within GFF356 at 19.412 kb on - strand, within GFF356 at 19.412 kb on - strand, within GFF356 at 19.479 kb on + strand, within GFF356 at 19.479 kb on + strand, within GFF356 at 19.480 kb on - strand, within GFF356 at 19.692 kb on + strand at 19.693 kb on - strand at 19.693 kb on - strand at 19.739 kb on - strand at 19.739 kb on - strand at 19.739 kb on - strand at 19.755 kb on + strand at 19.756 kb on - strand at 19.861 kb on - strand at 19.861 kb on - strand at 20.064 kb on + strand, within GFF357 at 20.064 kb on + strand, within GFF357 at 20.065 kb on - strand, within GFF357 at 20.268 kb on + strand, within GFF357 at 20.269 kb on - strand, within GFF357 at 20.269 kb on - strand, within GFF357 at 20.455 kb on - strand, within GFF357 at 20.590 kb on - strand, within GFF357 at 20.799 kb on + strand, within GFF357 at 20.800 kb on - strand, within GFF357 at 21.011 kb on - strand at 21.301 kb on + strand, within GFF358 at 21.302 kb on - strand, within GFF358 at 21.307 kb on + strand, within GFF358 at 21.307 kb on + strand, within GFF358 at 21.308 kb on - strand, within GFF358 at 21.350 kb on + strand, within GFF358 at 21.403 kb on + strand, within GFF358 at 21.404 kb on - strand, within GFF358 at 21.556 kb on + strand, within GFF358 at 21.556 kb on + strand, within GFF358 at 21.607 kb on + strand, within GFF358 at 21.607 kb on + strand, within GFF358 at 21.607 kb on + strand, within GFF358 at 21.607 kb on + strand, within GFF358 at 21.703 kb on + strand, within GFF358 at 21.704 kb on - strand, within GFF358 at 21.704 kb on - strand, within GFF358 at 21.767 kb on - strand, within GFF358 at 21.775 kb on + strand, within GFF358 at 21.775 kb on + strand, within GFF358 at 21.775 kb on + strand, within GFF358 at 21.776 kb on - strand, within GFF358 at 21.776 kb on - strand, within GFF358 at 21.781 kb on + strand, within GFF358 at 21.781 kb on + strand, within GFF358 at 21.782 kb on - strand, within GFF358 at 21.782 kb on - strand, within GFF358
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 18,871 + GFF356 0.18 +0.0 18,871 + GFF356 0.18 +0.6 18,871 + GFF356 0.18 -0.2 18,872 - GFF356 0.19 +0.7 18,872 - GFF356 0.19 +0.4 18,872 - GFF356 0.19 -0.5 18,872 - GFF356 0.19 -1.2 18,872 - GFF356 0.19 -1.2 18,982 + GFF356 0.31 -0.2 19,411 + GFF356 0.80 +0.6 19,411 + GFF356 0.80 +0.4 19,412 - GFF356 0.80 +0.2 19,412 - GFF356 0.80 -1.2 19,479 + GFF356 0.88 +1.2 19,479 + GFF356 0.88 +2.4 19,480 - GFF356 0.88 +0.2 19,692 + +0.5 19,693 - +0.4 19,693 - +1.1 19,739 - -0.5 19,739 - -0.5 19,739 - +0.2 19,755 + -1.4 19,756 - -0.7 19,861 - -1.8 19,861 - +0.6 20,064 + GFF357 0.27 +0.8 20,064 + GFF357 0.27 -0.4 20,065 - GFF357 0.27 -0.6 20,268 + GFF357 0.44 -0.4 20,269 - GFF357 0.44 -0.8 20,269 - GFF357 0.44 -1.3 20,455 - GFF357 0.60 -1.1 20,590 - GFF357 0.71 -0.5 20,799 + GFF357 0.89 +0.8 20,800 - GFF357 0.89 +0.4 21,011 - -1.7 21,301 + GFF358 0.32 -0.8 21,302 - GFF358 0.33 -0.9 21,307 + GFF358 0.33 -0.2 21,307 + GFF358 0.33 +0.4 21,308 - GFF358 0.33 -0.4 21,350 + GFF358 0.37 -1.5 21,403 + GFF358 0.41 +2.0 21,404 - GFF358 0.42 +3.1 21,556 + GFF358 0.55 +1.4 21,556 + GFF358 0.55 +0.7 21,607 + GFF358 0.60 +0.2 21,607 + GFF358 0.60 +0.4 21,607 + GFF358 0.60 -0.1 21,607 + GFF358 0.60 -0.6 21,703 + GFF358 0.68 -0.8 21,704 - GFF358 0.68 +0.2 21,704 - GFF358 0.68 -0.6 21,767 - GFF358 0.74 +1.7 21,775 + GFF358 0.74 -1.4 21,775 + GFF358 0.74 -0.7 21,775 + GFF358 0.74 -1.8 21,776 - GFF358 0.75 -0.3 21,776 - GFF358 0.75 +1.5 21,781 + GFF358 0.75 +0.3 21,781 + GFF358 0.75 +1.0 21,782 - GFF358 0.75 -1.0 21,782 - GFF358 0.75 +0.4
Or see this region's nucleotide sequence