Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3561

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3560 and GFF3561 are separated by 33 nucleotidesGFF3561 and GFF3562 are separated by 64 nucleotidesGFF3562 and GFF3563 overlap by 23 nucleotides GFF3560 - tRNA-dihydrouridine synthase C (EC 1.-.-.-), at 451,301 to 452,302 GFF3560 GFF3561 - Glutamate--cysteine ligase (EC 6.3.2.2), at 452,336 to 453,895 GFF3561 GFF3562 - Dienelactone hydrolase family, at 453,960 to 454,886 GFF3562 GFF3563 - NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2, at 454,864 to 455,499 GFF3563 Position (kb) 452 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 451.727 kb on + strand, within GFF3560at 451.728 kb on - strand, within GFF3560at 451.839 kb on - strand, within GFF3560at 451.839 kb on - strand, within GFF3560at 452.138 kb on + strand, within GFF3560at 452.139 kb on - strand, within GFF3560at 452.251 kb on + strandat 452.301 kb on - strandat 452.335 kb on + strandat 452.335 kb on + strandat 452.335 kb on + strandat 452.335 kb on + strandat 452.335 kb on + strandat 452.335 kb on + strandat 452.336 kb on - strandat 452.336 kb on - strandat 452.786 kb on + strand, within GFF3561at 452.786 kb on + strand, within GFF3561at 452.786 kb on + strand, within GFF3561at 452.786 kb on + strand, within GFF3561at 452.786 kb on + strand, within GFF3561at 452.787 kb on - strand, within GFF3561at 452.787 kb on - strand, within GFF3561at 452.787 kb on - strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.961 kb on - strand, within GFF3561at 452.961 kb on - strand, within GFF3561at 453.038 kb on + strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.101 kb on + strand, within GFF3561at 453.101 kb on + strand, within GFF3561at 453.137 kb on + strand, within GFF3561at 453.137 kb on + strand, within GFF3561at 453.137 kb on + strand, within GFF3561at 453.138 kb on - strand, within GFF3561at 453.182 kb on + strand, within GFF3561at 453.182 kb on + strand, within GFF3561at 453.183 kb on - strand, within GFF3561at 453.213 kb on - strand, within GFF3561at 453.260 kb on + strand, within GFF3561at 453.260 kb on + strand, within GFF3561at 453.260 kb on + strand, within GFF3561at 453.261 kb on - strand, within GFF3561at 453.261 kb on - strand, within GFF3561at 453.750 kb on - strandat 453.824 kb on + strandat 453.825 kb on - strandat 453.836 kb on + strandat 453.836 kb on + strandat 453.836 kb on + strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.908 kb on - strandat 453.908 kb on - strandat 453.908 kb on - strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 454.047 kb on + strandat 454.047 kb on + strandat 454.047 kb on + strandat 454.048 kb on - strandat 454.048 kb on - strandat 454.048 kb on - strandat 454.048 kb on - strandat 454.048 kb on - strandat 454.200 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.249 kb on - strand, within GFF3562at 454.249 kb on - strand, within GFF3562at 454.249 kb on - strand, within GFF3562at 454.371 kb on + strand, within GFF3562at 454.372 kb on - strand, within GFF3562at 454.554 kb on + strand, within GFF3562at 454.617 kb on + strand, within GFF3562at 454.617 kb on + strand, within GFF3562at 454.617 kb on + strand, within GFF3562at 454.618 kb on - strand, within GFF3562at 454.621 kb on - strand, within GFF3562at 454.621 kb on - strand, within GFF3562at 454.722 kb on + strand, within GFF3562at 454.722 kb on + strand, within GFF3562at 454.723 kb on - strand, within GFF3562at 454.723 kb on - strand, within GFF3562at 454.755 kb on + strand, within GFF3562at 454.755 kb on + strand, within GFF3562

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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451,727 + GFF3560 0.43 -0.5
451,728 - GFF3560 0.43 -0.3
451,839 - GFF3560 0.54 -0.6
451,839 - GFF3560 0.54 -1.0
452,138 + GFF3560 0.84 -0.0
452,139 - GFF3560 0.84 -0.0
452,251 + +1.9
452,301 - -2.1
452,335 + -0.4
452,335 + -0.3
452,335 + -0.8
452,335 + -0.0
452,335 + -0.9
452,335 + +0.9
452,336 - +0.2
452,336 - +1.9
452,786 + GFF3561 0.29 -0.3
452,786 + GFF3561 0.29 -2.3
452,786 + GFF3561 0.29 -0.3
452,786 + GFF3561 0.29 -1.5
452,786 + GFF3561 0.29 -1.3
452,787 - GFF3561 0.29 -1.7
452,787 - GFF3561 0.29 -1.5
452,787 - GFF3561 0.29 -3.7
452,960 + GFF3561 0.40 -2.4
452,960 + GFF3561 0.40 -2.2
452,960 + GFF3561 0.40 -2.6
452,960 + GFF3561 0.40 -1.7
452,960 + GFF3561 0.40 -2.5
452,960 + GFF3561 0.40 -0.9
452,960 + GFF3561 0.40 -1.8
452,960 + GFF3561 0.40 -1.8
452,961 - GFF3561 0.40 +0.3
452,961 - GFF3561 0.40 -1.6
453,038 + GFF3561 0.45 -2.8
453,039 - GFF3561 0.45 -1.9
453,039 - GFF3561 0.45 -0.7
453,039 - GFF3561 0.45 -0.3
453,039 - GFF3561 0.45 -0.9
453,039 - GFF3561 0.45 -0.9
453,101 + GFF3561 0.49 -3.6
453,101 + GFF3561 0.49 -1.7
453,137 + GFF3561 0.51 -2.2
453,137 + GFF3561 0.51 -0.3
453,137 + GFF3561 0.51 -2.3
453,138 - GFF3561 0.51 -1.0
453,182 + GFF3561 0.54 -3.2
453,182 + GFF3561 0.54 -1.3
453,183 - GFF3561 0.54 -3.5
453,213 - GFF3561 0.56 -3.3
453,260 + GFF3561 0.59 -1.0
453,260 + GFF3561 0.59 +1.3
453,260 + GFF3561 0.59 -1.9
453,261 - GFF3561 0.59 -2.0
453,261 - GFF3561 0.59 -1.9
453,750 - -2.2
453,824 + -3.7
453,825 - -2.5
453,836 + -1.0
453,836 + -2.3
453,836 + -0.9
453,837 - -1.4
453,837 - -1.9
453,837 - +0.3
453,837 - -2.2
453,837 - +0.3
453,837 - -2.1
453,837 - -1.0
453,908 - +0.5
453,908 - +1.6
453,908 - +0.2
453,959 + +1.3
453,959 + +0.3
453,959 + -0.2
453,959 + -0.6
453,959 + +0.1
453,959 + -0.6
453,959 + -0.2
453,960 - -0.2
453,960 - +1.3
453,960 - -0.0
453,960 - -0.5
453,960 - -0.8
453,960 - +1.4
453,960 - -1.7
453,960 - -0.5
453,960 - +1.3
453,960 - -0.3
453,960 - +0.6
454,047 + +0.1
454,047 + -0.7
454,047 + +0.1
454,048 - +0.5
454,048 - -0.6
454,048 - +0.9
454,048 - -0.5
454,048 - -1.6
454,200 + GFF3562 0.26 +0.6
454,248 + GFF3562 0.31 +0.4
454,248 + GFF3562 0.31 +1.3
454,248 + GFF3562 0.31 +1.0
454,248 + GFF3562 0.31 -0.2
454,248 + GFF3562 0.31 +1.3
454,249 - GFF3562 0.31 -0.7
454,249 - GFF3562 0.31 -0.5
454,249 - GFF3562 0.31 -0.5
454,371 + GFF3562 0.44 +0.7
454,372 - GFF3562 0.44 +2.8
454,554 + GFF3562 0.64 +0.2
454,617 + GFF3562 0.71 -0.0
454,617 + GFF3562 0.71 +1.0
454,617 + GFF3562 0.71 +3.4
454,618 - GFF3562 0.71 -0.6
454,621 - GFF3562 0.71 +0.3
454,621 - GFF3562 0.71 -0.0
454,722 + GFF3562 0.82 -0.2
454,722 + GFF3562 0.82 -0.0
454,723 - GFF3562 0.82 -0.4
454,723 - GFF3562 0.82 -0.7
454,755 + GFF3562 0.86 +0.6
454,755 + GFF3562 0.86 +0.3

Or see this region's nucleotide sequence