Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3544 and GFF3545 are separated by 15 nucleotides GFF3545 and GFF3546 are separated by 18 nucleotides
GFF3544 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 434,155 to 435,891
GFF3544
GFF3545 - Iron-uptake factor PiuC, at 435,907 to 436,587
GFF3545
GFF3546 - Ferrichrome-iron receptor, at 436,606 to 438,816
GFF3546
Position (kb) 435
436
437 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 435.010 kb on + strand, within GFF3544 at 435.011 kb on - strand, within GFF3544 at 435.011 kb on - strand, within GFF3544 at 435.011 kb on - strand, within GFF3544 at 435.011 kb on - strand, within GFF3544 at 435.233 kb on - strand, within GFF3544 at 435.256 kb on + strand, within GFF3544 at 435.257 kb on - strand, within GFF3544 at 435.257 kb on - strand, within GFF3544 at 435.538 kb on + strand, within GFF3544 at 435.539 kb on - strand, within GFF3544 at 435.541 kb on + strand, within GFF3544 at 435.541 kb on + strand, within GFF3544 at 435.541 kb on + strand, within GFF3544 at 435.542 kb on - strand, within GFF3544 at 435.542 kb on - strand, within GFF3544 at 435.542 kb on - strand, within GFF3544 at 435.778 kb on + strand at 435.779 kb on - strand at 435.941 kb on + strand at 435.941 kb on + strand at 435.941 kb on + strand at 435.941 kb on + strand at 435.941 kb on + strand at 435.942 kb on - strand at 436.079 kb on + strand, within GFF3545 at 436.310 kb on + strand, within GFF3545 at 436.310 kb on + strand, within GFF3545 at 436.310 kb on + strand, within GFF3545 at 436.311 kb on - strand, within GFF3545 at 436.610 kb on + strand at 436.611 kb on - strand at 436.611 kb on - strand at 436.615 kb on + strand at 436.661 kb on + strand at 436.662 kb on - strand at 436.685 kb on + strand at 436.685 kb on + strand at 436.689 kb on - strand at 436.689 kb on - strand at 436.689 kb on - strand at 436.709 kb on + strand at 436.709 kb on + strand at 436.766 kb on + strand at 436.775 kb on + strand at 436.826 kb on + strand at 436.854 kb on - strand, within GFF3546 at 436.854 kb on - strand, within GFF3546 at 436.892 kb on + strand, within GFF3546 at 436.893 kb on - strand, within GFF3546 at 436.893 kb on - strand, within GFF3546 at 436.893 kb on - strand, within GFF3546 at 437.081 kb on + strand, within GFF3546 at 437.081 kb on + strand, within GFF3546 at 437.081 kb on + strand, within GFF3546 at 437.081 kb on + strand, within GFF3546 at 437.081 kb on + strand, within GFF3546 at 437.082 kb on - strand, within GFF3546 at 437.082 kb on - strand, within GFF3546 at 437.082 kb on - strand, within GFF3546 at 437.351 kb on + strand, within GFF3546 at 437.351 kb on + strand, within GFF3546 at 437.352 kb on - strand, within GFF3546 at 437.412 kb on - strand, within GFF3546 at 437.525 kb on + strand, within GFF3546 at 437.525 kb on + strand, within GFF3546 at 437.525 kb on + strand, within GFF3546 at 437.525 kb on + strand, within GFF3546 at 437.525 kb on + strand, within GFF3546 at 437.526 kb on - strand, within GFF3546 at 437.531 kb on + strand, within GFF3546
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 435,010 + GFF3544 0.49 -0.6 435,011 - GFF3544 0.49 +1.3 435,011 - GFF3544 0.49 +0.1 435,011 - GFF3544 0.49 +0.3 435,011 - GFF3544 0.49 +0.9 435,233 - GFF3544 0.62 +0.5 435,256 + GFF3544 0.63 +0.2 435,257 - GFF3544 0.63 +0.1 435,257 - GFF3544 0.63 +1.8 435,538 + GFF3544 0.80 +1.5 435,539 - GFF3544 0.80 -1.2 435,541 + GFF3544 0.80 +0.2 435,541 + GFF3544 0.80 +1.0 435,541 + GFF3544 0.80 -0.6 435,542 - GFF3544 0.80 -0.2 435,542 - GFF3544 0.80 -0.0 435,542 - GFF3544 0.80 -0.2 435,778 + +0.3 435,779 - +0.1 435,941 + +1.3 435,941 + -2.0 435,941 + -0.3 435,941 + -1.3 435,941 + -0.3 435,942 - -0.7 436,079 + GFF3545 0.25 -1.3 436,310 + GFF3545 0.59 +0.3 436,310 + GFF3545 0.59 +3.4 436,310 + GFF3545 0.59 -1.6 436,311 - GFF3545 0.59 -1.0 436,610 + +0.3 436,611 - +0.6 436,611 - -0.4 436,615 + +0.1 436,661 + +0.2 436,662 - -0.1 436,685 + +0.1 436,685 + +0.2 436,689 - -0.8 436,689 - +0.0 436,689 - -0.2 436,709 + -1.0 436,709 + -0.3 436,766 + +1.0 436,775 + -0.7 436,826 + +0.1 436,854 - GFF3546 0.11 +2.6 436,854 - GFF3546 0.11 -0.3 436,892 + GFF3546 0.13 +1.0 436,893 - GFF3546 0.13 -1.3 436,893 - GFF3546 0.13 -0.3 436,893 - GFF3546 0.13 +2.5 437,081 + GFF3546 0.21 +1.2 437,081 + GFF3546 0.21 +1.6 437,081 + GFF3546 0.21 +0.1 437,081 + GFF3546 0.21 +0.5 437,081 + GFF3546 0.21 +0.5 437,082 - GFF3546 0.22 -0.7 437,082 - GFF3546 0.22 -0.9 437,082 - GFF3546 0.22 -0.2 437,351 + GFF3546 0.34 +0.5 437,351 + GFF3546 0.34 -0.1 437,352 - GFF3546 0.34 -0.3 437,412 - GFF3546 0.36 -0.9 437,525 + GFF3546 0.42 -1.5 437,525 + GFF3546 0.42 +1.1 437,525 + GFF3546 0.42 -0.1 437,525 + GFF3546 0.42 -1.0 437,525 + GFF3546 0.42 +0.6 437,526 - GFF3546 0.42 +0.4 437,531 + GFF3546 0.42 -0.1
Or see this region's nucleotide sequence