Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3395 and GFF3396 are separated by 4 nucleotides GFF3396 and GFF3397 overlap by 4 nucleotides GFF3397 and GFF3398 are separated by 41 nucleotides
GFF3395 - Enoyl-CoA hydratase (EC 4.2.1.17), at 279,647 to 280,438
GFF3395
GFF3396 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 280,443 to 281,264
GFF3396
GFF3397 - hypothetical protein, at 281,261 to 282,493
GFF3397
GFF3398 - hypothetical protein, at 282,535 to 283,764
GFF3398
Position (kb) 281
282
283 Strain fitness (log2 ratio) -1
0
1
2
3 at 280.525 kb on - strand at 280.526 kb on - strand, within GFF3396 at 280.526 kb on - strand, within GFF3396 at 280.526 kb on - strand, within GFF3396 at 280.526 kb on - strand, within GFF3396 at 280.603 kb on + strand, within GFF3396 at 280.604 kb on - strand, within GFF3396 at 280.604 kb on - strand, within GFF3396 at 280.604 kb on - strand, within GFF3396 at 280.816 kb on + strand, within GFF3396 at 280.816 kb on + strand, within GFF3396 at 281.409 kb on + strand, within GFF3397 at 281.598 kb on + strand, within GFF3397 at 281.599 kb on - strand, within GFF3397 at 281.656 kb on - strand, within GFF3397 at 281.656 kb on - strand, within GFF3397 at 281.874 kb on + strand, within GFF3397 at 281.874 kb on + strand, within GFF3397 at 281.874 kb on + strand, within GFF3397 at 281.874 kb on + strand, within GFF3397 at 281.874 kb on + strand, within GFF3397 at 281.875 kb on - strand, within GFF3397 at 281.875 kb on - strand, within GFF3397 at 281.875 kb on - strand, within GFF3397 at 282.250 kb on - strand, within GFF3397 at 282.511 kb on - strand at 282.723 kb on - strand, within GFF3398 at 282.926 kb on + strand, within GFF3398 at 283.190 kb on + strand, within GFF3398
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 280,525 - -0.3 280,526 - GFF3396 0.10 -0.3 280,526 - GFF3396 0.10 +0.6 280,526 - GFF3396 0.10 +0.9 280,526 - GFF3396 0.10 -0.7 280,603 + GFF3396 0.19 -0.4 280,604 - GFF3396 0.20 +0.4 280,604 - GFF3396 0.20 +0.3 280,604 - GFF3396 0.20 -1.0 280,816 + GFF3396 0.45 -0.0 280,816 + GFF3396 0.45 -1.5 281,409 + GFF3397 0.12 -0.5 281,598 + GFF3397 0.27 +0.2 281,599 - GFF3397 0.27 +2.9 281,656 - GFF3397 0.32 -0.8 281,656 - GFF3397 0.32 +0.9 281,874 + GFF3397 0.50 -0.1 281,874 + GFF3397 0.50 +0.8 281,874 + GFF3397 0.50 +0.1 281,874 + GFF3397 0.50 -0.1 281,874 + GFF3397 0.50 +0.2 281,875 - GFF3397 0.50 -1.0 281,875 - GFF3397 0.50 -0.4 281,875 - GFF3397 0.50 -0.7 282,250 - GFF3397 0.80 +1.0 282,511 - +1.3 282,723 - GFF3398 0.15 +0.4 282,926 + GFF3398 0.32 -0.1 283,190 + GFF3398 0.53 -0.3
Or see this region's nucleotide sequence