Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF31 and GFF32 are separated by 8 nucleotides GFF32 and GFF33 overlap by 4 nucleotides GFF33 and GFF34 are separated by 26 nucleotides
GFF31 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 28,485 to 29,273
GFF31
GFF32 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 29,282 to 30,058
GFF32
GFF33 - ABC transporter substrate-binding protein, at 30,055 to 31,065
GFF33
GFF34 - putative extracellular solute-binding protein, at 31,092 to 32,009
GFF34
Position (kb) 30
31
32 Strain fitness (log2 ratio) -1
0
1
2
3 at 29.353 kb on - strand at 29.463 kb on + strand, within GFF32 at 29.463 kb on + strand, within GFF32 at 30.155 kb on + strand at 30.156 kb on - strand, within GFF33 at 30.326 kb on + strand, within GFF33 at 30.332 kb on + strand, within GFF33 at 30.333 kb on - strand, within GFF33 at 30.428 kb on + strand, within GFF33 at 30.429 kb on - strand, within GFF33 at 30.570 kb on - strand, within GFF33 at 30.570 kb on - strand, within GFF33 at 30.893 kb on + strand, within GFF33 at 30.893 kb on + strand, within GFF33 at 31.720 kb on + strand, within GFF34 at 31.720 kb on + strand, within GFF34 at 31.721 kb on - strand, within GFF34 at 31.721 kb on - strand, within GFF34 at 31.721 kb on - strand, within GFF34 at 31.753 kb on + strand, within GFF34 at 31.954 kb on + strand at 31.954 kb on + strand at 31.954 kb on + strand at 31.954 kb on + strand at 31.954 kb on + strand at 31.954 kb on + strand at 31.955 kb on - strand at 31.955 kb on - strand at 31.955 kb on - strand at 32.062 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 29,353 - +0.2 29,463 + GFF32 0.23 +0.2 29,463 + GFF32 0.23 +0.2 30,155 + -0.7 30,156 - GFF33 0.10 -0.4 30,326 + GFF33 0.27 -0.2 30,332 + GFF33 0.27 -0.8 30,333 - GFF33 0.27 -0.5 30,428 + GFF33 0.37 -0.4 30,429 - GFF33 0.37 +0.3 30,570 - GFF33 0.51 +0.3 30,570 - GFF33 0.51 -0.4 30,893 + GFF33 0.83 +0.5 30,893 + GFF33 0.83 -1.0 31,720 + GFF34 0.68 -0.2 31,720 + GFF34 0.68 -0.1 31,721 - GFF34 0.69 -0.6 31,721 - GFF34 0.69 +0.3 31,721 - GFF34 0.69 -0.3 31,753 + GFF34 0.72 +0.0 31,954 + -0.5 31,954 + +2.9 31,954 + -0.6 31,954 + -1.1 31,954 + +0.6 31,954 + -0.2 31,955 - +0.7 31,955 - +0.8 31,955 - -1.3 32,062 - -0.8
Or see this region's nucleotide sequence