Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3261

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
142,455	+		GFF3260	0.32	+0.9
142,495	+		GFF3260	0.35	-0.5
142,567	+		GFF3260	0.40	+1.3
142,567	+		GFF3260	0.40	+0.7
142,568	-		GFF3260	0.40	+1.5
142,579	+		GFF3260	0.41	+1.9
142,580	-		GFF3260	0.41	+2.1
142,653	+		GFF3260	0.47	-0.1
142,744	+		GFF3260	0.53	+0.5
142,745	-		GFF3260	0.54	-0.5
142,745	-		GFF3260	0.54	+2.6
142,801	+		GFF3260	0.58	-0.1
142,906	+		GFF3260	0.66	-0.2
143,398	+				-0.7
143,398	+				-0.4
143,399	-				+0.1
143,542	+		GFF3261	0.15	-0.6
143,651	-		GFF3261	0.24	+0.5
143,662	+		GFF3261	0.25	+0.2
143,662	+		GFF3261	0.25	-0.1
143,875	+		GFF3261	0.43	-0.1
143,875	+		GFF3261	0.43	-0.1
143,875	+		GFF3261	0.43	+0.7
143,875	+		GFF3261	0.43	+0.5
143,875	+		GFF3261	0.43	-0.1
143,875	+		GFF3261	0.43	-0.9
143,876	-		GFF3261	0.43	-0.6
143,876	-		GFF3261	0.43	-1.2
143,876	-		GFF3261	0.43	-1.3
143,876	-		GFF3261	0.43	+0.2
143,878	+		GFF3261	0.44	-0.3
144,214	+		GFF3261	0.72	-0.7
144,214	+		GFF3261	0.72	-0.9
144,214	+		GFF3261	0.72	-0.5
144,215	-		GFF3261	0.72	+0.1
144,215	-		GFF3261	0.72	+0.9
144,215	-		GFF3261	0.72	-0.2
144,215	-		GFF3261	0.72	-0.8
144,241	+		GFF3261	0.74	+0.7
144,241	+		GFF3261	0.74	-0.6
144,271	+		GFF3261	0.77	-0.6
144,271	+		GFF3261	0.77	+0.7
144,271	+		GFF3261	0.77	+0.3
144,351	+		GFF3261	0.84	+0.5
144,352	-		GFF3261	0.84	+0.4
144,396	+		GFF3261	0.88	-1.2
144,396	+		GFF3261	0.88	-0.7
144,397	-		GFF3261	0.88	+0.7
144,487	+				-0.6
144,487	+				-0.9
144,487	+				-0.4
144,487	+				-0.3
144,487	+				+0.7
144,488	-				-0.9
144,488	-				+0.0
144,488	-				-0.3
144,488	-				+0.3
144,616	+				-1.6
144,616	+				-0.1
144,616	+				+4.3
144,616	+				+0.6
144,616	+				-0.2
144,616	+				+0.5
144,617	-				+0.9
144,715	-				+0.3
144,782	+				+0.7
144,783	-				+1.9
144,783	-				+0.3
144,790	+				-0.5
144,790	+				-0.6
144,790	+				-0.5
144,790	+				-0.2
144,790	+				-1.6
144,790	+				+0.1
144,790	+				+0.0
144,791	-				-0.5
144,791	-				+1.3
144,791	-				-1.7
144,791	-				+0.9
144,791	-				-1.3
144,791	-				-0.4
144,791	-				-0.5
144,888	+				+0.6
144,888	+				-0.5
144,888	+				+0.2
144,889	-				+0.1
144,889	-				+1.0
144,889	-				-0.4
144,889	-				+0.5
145,351	+		GFF3262	0.41	+0.8
145,351	+		GFF3262	0.41	-0.2
145,352	-		GFF3262	0.41	+0.7
145,352	-		GFF3262	0.41	-1.3
145,352	-		GFF3262	0.41	-0.1