Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3039

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
114,933	+		GFF3037	0.78	-0.3
114,933	+		GFF3037	0.78	+0.1
114,933	+		GFF3037	0.78	+0.4
114,933	+		GFF3037	0.78	-0.1
114,933	+		GFF3037	0.78	+0.2
114,933	+		GFF3037	0.78	-0.6
114,933	+		GFF3037	0.78	-0.3
114,934	-		GFF3037	0.78	-0.8
114,934	-		GFF3037	0.78	-0.4
114,934	-		GFF3037	0.78	-0.5
114,934	-		GFF3037	0.78	+0.4
114,934	-		GFF3037	0.78	+0.0
115,362	-		GFF3038	0.82	+0.4
115,402	+				+1.1
115,403	-				-1.1
115,525	+				-0.1
115,570	+				-0.9
115,570	+				-0.2
115,570	+				+0.1
115,570	+				+1.0
115,571	-				+0.8
115,571	-				+0.4
115,571	-				-1.0
115,571	-				-0.3
115,571	-				-1.4
115,602	+				-0.6
115,602	+				-0.5
115,602	+				-1.0
115,603	-				-0.1
115,603	-				+0.2
115,603	-				-0.5
115,603	-				-1.4
115,603	-				-1.2
115,603	-				-2.2
116,165	+		GFF3039	0.17	+3.4
116,732	+		GFF3039	0.33	-0.1
116,732	+		GFF3039	0.33	+1.0
116,732	+		GFF3039	0.33	-0.6
116,732	+		GFF3039	0.33	+0.7
116,732	+		GFF3039	0.33	+0.4
116,732	+		GFF3039	0.33	+0.5
116,733	-		GFF3039	0.33	+0.0
116,733	-		GFF3039	0.33	+1.4
116,733	-		GFF3039	0.33	+1.4
116,733	-		GFF3039	0.33	-0.7
116,733	-		GFF3039	0.33	-0.3
116,733	-		GFF3039	0.33	-0.4
116,733	-		GFF3039	0.33	+1.2
117,092	+		GFF3039	0.43	+0.4
117,092	+		GFF3039	0.43	-0.2
117,092	+		GFF3039	0.43	+0.6
117,092	+		GFF3039	0.43	-1.0
117,092	+		GFF3039	0.43	-1.6
117,092	+		GFF3039	0.43	-0.5
117,092	+		GFF3039	0.43	+0.6
117,092	+		GFF3039	0.43	+0.8
117,093	+		GFF3039	0.43	-0.2
117,093	-		GFF3039	0.43	+1.4
117,093	-		GFF3039	0.43	+0.2
117,093	-		GFF3039	0.43	+1.7
117,093	-		GFF3039	0.43	-1.0
117,175	-		GFF3039	0.46	+0.1
117,175	-		GFF3039	0.46	-0.1
117,175	-		GFF3039	0.46	-0.2
117,198	+		GFF3039	0.46	+0.2
117,199	-		GFF3039	0.46	-0.2
117,199	-		GFF3039	0.46	+0.0
117,199	-		GFF3039	0.46	+0.3
117,408	+		GFF3039	0.52	-0.6
117,409	-		GFF3039	0.52	-0.6
117,697	-		GFF3039	0.60	+0.4
117,725	+		GFF3039	0.61	+1.7
117,994	-		GFF3039	0.69	+1.4
118,398	+		GFF3039	0.80	-0.2
118,398	+		GFF3039	0.80	-0.5
118,398	+		GFF3039	0.80	+1.4
118,398	+		GFF3039	0.80	-1.0
118,398	+		GFF3039	0.80	-0.2
118,398	+		GFF3039	0.80	+0.1
118,401	+		GFF3039	0.80	+0.0
118,401	+		GFF3039	0.80	+1.4
118,401	+		GFF3039	0.80	+1.4
118,401	+		GFF3039	0.80	+0.9
118,401	+		GFF3039	0.80	-0.2
118,401	+		GFF3039	0.80	-0.6
118,401	+		GFF3039	0.80	+0.1
118,401	+		GFF3039	0.80	+0.2
118,401	+		GFF3039	0.80	-0.1
118,402	-		GFF3039	0.80	+0.7
118,402	-		GFF3039	0.80	-0.5
118,476	+		GFF3039	0.83	+0.1
118,476	+		GFF3039	0.83	+0.5
118,476	+		GFF3039	0.83	-0.6
118,476	+		GFF3039	0.83	-1.2
118,476	+		GFF3039	0.83	+0.0
118,477	-		GFF3039	0.83	-0.5
118,477	-		GFF3039	0.83	+2.7
118,490	+		GFF3039	0.83	-0.8
118,533	+		GFF3039	0.84	-0.2
118,533	+		GFF3039	0.84	+0.6
118,533	+		GFF3039	0.84	+0.6
118,534	-		GFF3039	0.84	+0.8
118,534	-		GFF3039	0.84	+0.7
118,534	-		GFF3039	0.84	+2.3
118,534	-		GFF3039	0.84	+0.2
118,534	-		GFF3039	0.84	-0.4
118,534	-		GFF3039	0.84	+0.7
118,790	+				+2.4
118,790	+				+0.4
118,790	+				+1.9
118,790	+				-0.3
118,790	+				+0.5
118,790	+				-1.0
118,791	+				-1.4
118,791	-				+1.1
118,791	-				-0.4
118,791	-				+0.4
118,791	-				-0.2
118,871	-				-0.5
118,943	+				+0.8
118,943	+				+1.8
118,943	+				-0.1
118,944	-				+0.7
118,944	-				+0.9
118,944	-				-1.2
118,944	-				-1.5
119,088	+				-0.6
119,088	+				-0.7
119,088	+				-0.4
119,089	-				-0.4
119,146	+				-0.3
119,146	+				+0.7
119,237	-				+1.4
119,237	-				+0.4
119,449	+		GFF3040	0.16	-1.1
119,449	+		GFF3040	0.16	+0.9
119,449	+		GFF3040	0.16	-0.6
119,812	+		GFF3040	0.32	-0.2
119,812	+		GFF3040	0.32	+1.4
119,812	+		GFF3040	0.32	+0.1
119,812	+		GFF3040	0.32	+0.8
119,812	+		GFF3040	0.32	+0.7
119,813	-		GFF3040	0.32	+0.1
119,813	-		GFF3040	0.32	-0.8