Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2972

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
49,480	+				+0.1
49,480	+				-1.1
49,480	+				+1.2
49,480	+				-0.1
49,480	+				+0.2
49,480	+				-0.1
49,480	+				+0.4
49,481	-				-1.1
49,481	-				+0.7
49,481	-				-1.1
49,481	-				-1.7
49,550	-				-0.6
49,550	-				-0.6
49,772	+		GFF2971	0.27	+1.2
49,773	-		GFF2971	0.27	-0.3
49,773	-		GFF2971	0.27	+0.4
49,773	-		GFF2971	0.27	+0.9
49,778	+		GFF2971	0.28	+0.2
49,778	+		GFF2971	0.28	-1.3
49,952	+		GFF2971	0.49	-0.3
49,952	+		GFF2971	0.49	-0.6
49,952	+		GFF2971	0.49	+0.8
49,952	+		GFF2971	0.49	+0.1
49,952	+		GFF2971	0.49	-0.8
49,952	+		GFF2971	0.49	-1.8
49,953	-		GFF2971	0.49	+0.8
49,953	-		GFF2971	0.49	-0.6
49,953	-		GFF2971	0.49	-0.4
49,953	-		GFF2971	0.49	-0.4
49,953	-		GFF2971	0.49	-1.1
49,953	-		GFF2971	0.49	-0.0
49,988	+		GFF2971	0.54	+0.4
50,177	+		GFF2971	0.77	-0.2
50,396	+				+1.0
50,397	-				-0.9
50,397	-				+0.3
50,397	-				-0.1
50,397	-				+0.9
50,397	-				-1.1
50,397	-				-1.2
50,397	-				+0.2
50,397	-				+0.4
50,397	-				-0.3
50,504	+		GFF2972	0.11	+1.2
50,940	-		GFF2972	0.45	-0.2
50,940	-		GFF2972	0.45	+0.8
50,940	-		GFF2972	0.45	-1.1
51,227	+		GFF2972	0.68	+0.5
51,227	+		GFF2972	0.68	-1.4
51,228	-		GFF2972	0.68	-0.6
51,228	-		GFF2972	0.68	-0.5
51,753	-		GFF2973	0.20	-0.1
52,219	+				-0.7
52,439	-		GFF2974	0.29	+0.6
52,439	-		GFF2974	0.29	+1.4
52,463	-		GFF2974	0.31	+0.1
52,477	+		GFF2974	0.32	+0.8
52,478	-		GFF2974	0.33	-1.1