Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2870 and GFF2871 are separated by 61 nucleotides GFF2871 and GFF2872 overlap by 4 nucleotides GFF2872 and GFF2873 overlap by 4 nucleotides
GFF2870 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 458,278 to 459,432
GFF2870
GFF2871 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 459,494 to 460,369
GFF2871
GFF2872 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 460,366 to 461,358
GFF2872
GFF2873 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 461,355 to 462,116
GFF2873
Position (kb) 459
460
461 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 458.686 kb on + strand, within GFF2870 at 458.686 kb on + strand, within GFF2870 at 458.686 kb on + strand, within GFF2870 at 458.687 kb on - strand, within GFF2870 at 458.687 kb on - strand, within GFF2870 at 458.740 kb on + strand, within GFF2870 at 458.740 kb on + strand, within GFF2870 at 458.776 kb on + strand, within GFF2870 at 458.776 kb on + strand, within GFF2870 at 458.776 kb on + strand, within GFF2870 at 458.777 kb on - strand, within GFF2870 at 458.941 kb on + strand, within GFF2870 at 459.151 kb on + strand, within GFF2870 at 459.152 kb on - strand, within GFF2870 at 459.157 kb on + strand, within GFF2870 at 459.157 kb on + strand, within GFF2870 at 459.158 kb on - strand, within GFF2870 at 459.158 kb on - strand, within GFF2870 at 459.431 kb on - strand at 459.545 kb on + strand at 459.545 kb on + strand at 460.064 kb on + strand, within GFF2871 at 460.064 kb on + strand, within GFF2871 at 460.125 kb on - strand, within GFF2871 at 460.277 kb on + strand, within GFF2871 at 460.365 kb on + strand at 460.365 kb on + strand at 460.441 kb on + strand at 460.441 kb on + strand at 460.442 kb on - strand at 460.450 kb on + strand at 460.462 kb on + strand at 460.462 kb on + strand at 460.687 kb on + strand, within GFF2872 at 460.687 kb on + strand, within GFF2872 at 460.688 kb on - strand, within GFF2872 at 460.688 kb on - strand, within GFF2872 at 460.831 kb on + strand, within GFF2872 at 460.832 kb on - strand, within GFF2872 at 460.834 kb on + strand, within GFF2872 at 460.835 kb on - strand, within GFF2872 at 460.835 kb on - strand, within GFF2872 at 460.835 kb on - strand, within GFF2872 at 460.972 kb on + strand, within GFF2872 at 460.972 kb on + strand, within GFF2872 at 461.092 kb on + strand, within GFF2872 at 461.092 kb on + strand, within GFF2872 at 461.093 kb on - strand, within GFF2872 at 461.093 kb on - strand, within GFF2872 at 461.093 kb on - strand, within GFF2872 at 461.093 kb on - strand, within GFF2872 at 461.197 kb on + strand, within GFF2872
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 458,686 + GFF2870 0.35 -0.7 458,686 + GFF2870 0.35 -0.4 458,686 + GFF2870 0.35 -2.8 458,687 - GFF2870 0.35 -0.9 458,687 - GFF2870 0.35 -0.0 458,740 + GFF2870 0.40 -0.8 458,740 + GFF2870 0.40 -1.4 458,776 + GFF2870 0.43 -1.6 458,776 + GFF2870 0.43 -0.4 458,776 + GFF2870 0.43 -1.2 458,777 - GFF2870 0.43 +0.5 458,941 + GFF2870 0.57 -0.2 459,151 + GFF2870 0.76 -1.6 459,152 - GFF2870 0.76 +3.1 459,157 + GFF2870 0.76 -0.3 459,157 + GFF2870 0.76 -1.9 459,158 - GFF2870 0.76 -2.3 459,158 - GFF2870 0.76 -0.7 459,431 - -0.5 459,545 + -2.1 459,545 + -2.5 460,064 + GFF2871 0.65 -1.9 460,064 + GFF2871 0.65 -2.0 460,125 - GFF2871 0.72 -1.0 460,277 + GFF2871 0.89 -1.9 460,365 + +0.3 460,365 + -0.5 460,441 + -1.8 460,441 + -1.0 460,442 - -1.7 460,450 + +0.6 460,462 + +0.9 460,462 + -1.6 460,687 + GFF2872 0.32 -1.6 460,687 + GFF2872 0.32 -2.9 460,688 - GFF2872 0.32 -0.7 460,688 - GFF2872 0.32 -1.6 460,831 + GFF2872 0.47 -1.9 460,832 - GFF2872 0.47 -1.9 460,834 + GFF2872 0.47 -1.9 460,835 - GFF2872 0.47 -2.5 460,835 - GFF2872 0.47 -2.5 460,835 - GFF2872 0.47 -3.0 460,972 + GFF2872 0.61 -0.9 460,972 + GFF2872 0.61 -1.7 461,092 + GFF2872 0.73 -1.1 461,092 + GFF2872 0.73 +2.2 461,093 - GFF2872 0.73 -0.7 461,093 - GFF2872 0.73 -1.6 461,093 - GFF2872 0.73 -0.9 461,093 - GFF2872 0.73 +0.6 461,197 + GFF2872 0.84 +0.3
Or see this region's nucleotide sequence