Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2798

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2796 and GFF2797 are separated by 103 nucleotidesGFF2797 and GFF2798 overlap by 4 nucleotidesGFF2798 and GFF2799 are separated by 188 nucleotides GFF2796 - FIG00931903: hypothetical protein, at 393,101 to 394,144 GFF2796 GFF2797 - FIG074102: hypothetical protein, at 394,248 to 395,138 GFF2797 GFF2798 - tRNA-guanine transglycosylase (EC 2.4.2.29), at 395,135 to 396,301 GFF2798 GFF2799 - Predicted thiazole transporter ThiU, at 396,490 to 397,758 GFF2799 Position (kb) 395 396 397Strain fitness (log2 ratio) -2 -1 0 1 2at 394.195 kb on + strandat 394.196 kb on - strandat 394.753 kb on - strand, within GFF2797at 394.776 kb on + strand, within GFF2797at 394.776 kb on + strand, within GFF2797at 394.776 kb on + strand, within GFF2797at 394.777 kb on - strand, within GFF2797at 394.777 kb on - strand, within GFF2797at 394.777 kb on - strand, within GFF2797at 394.777 kb on - strand, within GFF2797at 394.974 kb on + strand, within GFF2797at 394.974 kb on + strand, within GFF2797at 394.974 kb on + strand, within GFF2797at 394.974 kb on + strand, within GFF2797at 394.974 kb on + strand, within GFF2797at 394.974 kb on + strand, within GFF2797at 394.974 kb on + strand, within GFF2797at 394.974 kb on + strand, within GFF2797at 394.974 kb on + strand, within GFF2797at 394.974 kb on + strand, within GFF2797at 394.975 kb on - strand, within GFF2797at 394.975 kb on - strand, within GFF2797at 394.975 kb on - strand, within GFF2797at 395.025 kb on + strand, within GFF2797at 395.026 kb on - strand, within GFF2797at 395.040 kb on + strand, within GFF2797at 395.040 kb on + strand, within GFF2797at 395.041 kb on - strand, within GFF2797at 395.041 kb on - strand, within GFF2797at 395.041 kb on - strand, within GFF2797at 395.136 kb on + strandat 395.232 kb on + strandat 395.232 kb on + strandat 395.232 kb on + strandat 395.233 kb on - strandat 395.233 kb on - strandat 395.233 kb on - strandat 395.233 kb on - strandat 395.235 kb on + strandat 395.235 kb on + strandat 395.236 kb on - strandat 395.236 kb on - strandat 395.236 kb on - strandat 395.236 kb on - strandat 395.236 kb on - strandat 395.559 kb on + strand, within GFF2798at 395.560 kb on - strand, within GFF2798at 395.856 kb on + strand, within GFF2798at 395.857 kb on - strand, within GFF2798at 395.857 kb on - strand, within GFF2798at 396.042 kb on - strand, within GFF2798at 396.195 kb on + strandat 396.195 kb on + strandat 396.196 kb on - strandat 396.196 kb on - strandat 396.196 kb on - strandat 396.335 kb on + strandat 396.336 kb on - strandat 396.336 kb on - strandat 396.337 kb on + strandat 396.356 kb on - strandat 396.511 kb on + strandat 396.511 kb on + strandat 396.511 kb on + strandat 396.512 kb on - strandat 396.512 kb on - strandat 396.512 kb on - strandat 396.512 kb on - strandat 396.517 kb on + strandat 396.517 kb on + strandat 396.518 kb on - strandat 396.518 kb on - strandat 396.520 kb on + strandat 396.520 kb on + strandat 396.520 kb on + strandat 396.520 kb on + strandat 396.520 kb on + strandat 396.520 kb on + strandat 396.520 kb on + strandat 396.521 kb on - strandat 396.521 kb on - strandat 396.521 kb on - strandat 396.521 kb on - strandat 396.521 kb on - strandat 396.526 kb on + strandat 396.526 kb on + strandat 396.526 kb on + strandat 396.526 kb on + strandat 396.526 kb on + strandat 396.527 kb on - strandat 396.527 kb on - strandat 396.754 kb on + strand, within GFF2799at 396.754 kb on + strand, within GFF2799at 396.755 kb on - strand, within GFF2799at 397.045 kb on + strand, within GFF2799at 397.045 kb on + strand, within GFF2799at 397.045 kb on + strand, within GFF2799at 397.045 kb on + strand, within GFF2799at 397.046 kb on - strand, within GFF2799at 397.046 kb on - strand, within GFF2799at 397.186 kb on + strand, within GFF2799at 397.186 kb on + strand, within GFF2799at 397.186 kb on + strand, within GFF2799at 397.186 kb on + strand, within GFF2799at 397.187 kb on - strand, within GFF2799at 397.187 kb on - strand, within GFF2799at 397.198 kb on + strand, within GFF2799at 397.198 kb on + strand, within GFF2799at 397.225 kb on + strand, within GFF2799at 397.226 kb on - strand, within GFF2799at 397.226 kb on - strand, within GFF2799

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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394,195 + -1.3
394,196 - -0.9
394,753 - GFF2797 0.57 -0.4
394,776 + GFF2797 0.59 +0.3
394,776 + GFF2797 0.59 +1.4
394,776 + GFF2797 0.59 -0.7
394,777 - GFF2797 0.59 +1.0
394,777 - GFF2797 0.59 +0.7
394,777 - GFF2797 0.59 +1.9
394,777 - GFF2797 0.59 -0.4
394,974 + GFF2797 0.81 -0.7
394,974 + GFF2797 0.81 -0.2
394,974 + GFF2797 0.81 -0.3
394,974 + GFF2797 0.81 -1.2
394,974 + GFF2797 0.81 -0.5
394,974 + GFF2797 0.81 +1.6
394,974 + GFF2797 0.81 +0.4
394,974 + GFF2797 0.81 +0.3
394,974 + GFF2797 0.81 -0.7
394,974 + GFF2797 0.81 +1.4
394,975 - GFF2797 0.82 -0.0
394,975 - GFF2797 0.82 -0.3
394,975 - GFF2797 0.82 -0.6
395,025 + GFF2797 0.87 +0.3
395,026 - GFF2797 0.87 +0.4
395,040 + GFF2797 0.89 -1.5
395,040 + GFF2797 0.89 +0.5
395,041 - GFF2797 0.89 -0.3
395,041 - GFF2797 0.89 +1.0
395,041 - GFF2797 0.89 -0.3
395,136 + -0.8
395,232 + +1.3
395,232 + +1.1
395,232 + -0.4
395,233 - +0.5
395,233 - +2.5
395,233 - -0.4
395,233 - +0.1
395,235 + -0.6
395,235 + +0.4
395,236 - +1.7
395,236 - -0.7
395,236 - -0.1
395,236 - -0.3
395,236 - +0.5
395,559 + GFF2798 0.36 -0.2
395,560 - GFF2798 0.36 -0.5
395,856 + GFF2798 0.62 -0.8
395,857 - GFF2798 0.62 +0.2
395,857 - GFF2798 0.62 +0.1
396,042 - GFF2798 0.78 -0.0
396,195 + -0.9
396,195 + -0.9
396,196 - +0.4
396,196 - +0.3
396,196 - +1.6
396,335 + -1.7
396,336 - -0.6
396,336 - -0.4
396,337 + -0.2
396,356 - -0.0
396,511 + -0.7
396,511 + -1.0
396,511 + +1.1
396,512 - -2.7
396,512 - -0.6
396,512 - -0.4
396,512 - -0.9
396,517 + -1.0
396,517 + -0.2
396,518 - -0.8
396,518 - -1.1
396,520 + -0.1
396,520 + +0.1
396,520 + -0.6
396,520 + +1.9
396,520 + -1.1
396,520 + +1.1
396,520 + +0.1
396,521 - -0.3
396,521 - +0.8
396,521 - -0.1
396,521 - -0.0
396,521 - -0.7
396,526 + +0.2
396,526 + +0.3
396,526 + -1.0
396,526 + +1.8
396,526 + -1.3
396,527 - -0.4
396,527 - -1.5
396,754 + GFF2799 0.21 +0.1
396,754 + GFF2799 0.21 -0.9
396,755 - GFF2799 0.21 -0.6
397,045 + GFF2799 0.44 -0.3
397,045 + GFF2799 0.44 +0.6
397,045 + GFF2799 0.44 +1.5
397,045 + GFF2799 0.44 -0.9
397,046 - GFF2799 0.44 -0.4
397,046 - GFF2799 0.44 -0.3
397,186 + GFF2799 0.55 +1.6
397,186 + GFF2799 0.55 -0.3
397,186 + GFF2799 0.55 +0.5
397,186 + GFF2799 0.55 -0.6
397,187 - GFF2799 0.55 -1.8
397,187 - GFF2799 0.55 +1.3
397,198 + GFF2799 0.56 -0.5
397,198 + GFF2799 0.56 +1.1
397,225 + GFF2799 0.58 +1.2
397,226 - GFF2799 0.58 -0.3
397,226 - GFF2799 0.58 +0.6

Or see this region's nucleotide sequence