Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2762

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2761 and GFF2762 are separated by 10 nucleotidesGFF2762 and GFF2763 are separated by 155 nucleotides GFF2761 - protein of unknown function DUF1501, at 359,309 to 360,769 GFF2761 GFF2762 - FIG00347566: hypothetical protein, at 360,780 to 362,651 GFF2762 GFF2763 - Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23), at 362,807 to 363,646 GFF2763 Position (kb) 360 361 362 363Strain fitness (log2 ratio) -2 -1 0 1 2 3at 359.967 kb on + strand, within GFF2761at 359.967 kb on + strand, within GFF2761at 359.968 kb on - strand, within GFF2761at 359.968 kb on - strand, within GFF2761at 359.968 kb on - strand, within GFF2761at 359.968 kb on - strand, within GFF2761at 359.968 kb on - strand, within GFF2761at 360.042 kb on + strand, within GFF2761at 360.042 kb on + strand, within GFF2761at 360.042 kb on + strand, within GFF2761at 360.043 kb on - strand, within GFF2761at 360.043 kb on - strand, within GFF2761at 360.043 kb on - strand, within GFF2761at 360.043 kb on - strand, within GFF2761at 360.096 kb on + strand, within GFF2761at 360.292 kb on - strand, within GFF2761at 360.315 kb on + strand, within GFF2761at 360.315 kb on + strand, within GFF2761at 360.315 kb on + strand, within GFF2761at 360.315 kb on + strand, within GFF2761at 360.316 kb on - strand, within GFF2761at 360.316 kb on - strand, within GFF2761at 360.316 kb on - strand, within GFF2761at 360.316 kb on - strand, within GFF2761at 360.541 kb on - strand, within GFF2761at 360.549 kb on + strand, within GFF2761at 360.565 kb on - strand, within GFF2761at 360.585 kb on + strand, within GFF2761at 360.628 kb on - strandat 360.781 kb on + strandat 360.781 kb on + strandat 360.782 kb on - strandat 360.782 kb on - strandat 360.782 kb on - strandat 360.782 kb on - strandat 360.782 kb on - strandat 360.782 kb on - strandat 360.796 kb on + strandat 360.797 kb on - strandat 360.797 kb on - strandat 361.003 kb on + strand, within GFF2762at 361.003 kb on + strand, within GFF2762at 361.003 kb on + strand, within GFF2762at 361.003 kb on + strand, within GFF2762at 361.027 kb on + strand, within GFF2762at 361.027 kb on + strand, within GFF2762at 361.027 kb on + strand, within GFF2762at 361.027 kb on + strand, within GFF2762at 361.028 kb on - strand, within GFF2762at 361.028 kb on - strand, within GFF2762at 361.028 kb on - strand, within GFF2762at 361.028 kb on - strand, within GFF2762at 361.108 kb on + strand, within GFF2762at 361.192 kb on + strand, within GFF2762at 361.193 kb on - strand, within GFF2762at 361.489 kb on + strand, within GFF2762at 361.490 kb on - strand, within GFF2762at 361.490 kb on - strand, within GFF2762at 361.714 kb on + strand, within GFF2762at 361.714 kb on + strand, within GFF2762at 361.714 kb on + strand, within GFF2762at 361.714 kb on + strand, within GFF2762at 361.714 kb on + strand, within GFF2762at 361.715 kb on - strand, within GFF2762at 361.804 kb on + strand, within GFF2762at 361.804 kb on + strand, within GFF2762at 361.805 kb on + strand, within GFF2762at 361.805 kb on - strand, within GFF2762at 361.805 kb on - strand, within GFF2762at 361.805 kb on - strand, within GFF2762at 361.861 kb on + strand, within GFF2762at 361.861 kb on + strand, within GFF2762at 361.861 kb on + strand, within GFF2762at 361.861 kb on + strand, within GFF2762at 361.900 kb on + strand, within GFF2762at 361.900 kb on + strand, within GFF2762at 361.900 kb on + strand, within GFF2762at 361.901 kb on - strand, within GFF2762at 362.057 kb on - strand, within GFF2762at 362.192 kb on - strand, within GFF2762at 362.206 kb on + strand, within GFF2762at 362.206 kb on + strand, within GFF2762at 362.206 kb on + strand, within GFF2762at 362.206 kb on + strand, within GFF2762at 362.206 kb on + strand, within GFF2762at 362.207 kb on - strand, within GFF2762at 362.207 kb on - strand, within GFF2762at 362.207 kb on - strand, within GFF2762at 362.207 kb on - strand, within GFF2762at 362.207 kb on - strand, within GFF2762at 362.207 kb on - strand, within GFF2762at 362.230 kb on + strand, within GFF2762at 362.272 kb on + strand, within GFF2762at 362.705 kb on - strandat 362.727 kb on + strandat 362.727 kb on + strandat 362.728 kb on - strandat 362.728 kb on - strandat 362.893 kb on - strand, within GFF2763at 362.893 kb on - strand, within GFF2763at 363.138 kb on + strand, within GFF2763at 363.306 kb on + strand, within GFF2763at 363.330 kb on + strand, within GFF2763at 363.330 kb on + strand, within GFF2763at 363.330 kb on + strand, within GFF2763at 363.525 kb on + strand, within GFF2763at 363.526 kb on - strand, within GFF2763

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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359,967 + GFF2761 0.45 +0.1
359,967 + GFF2761 0.45 +1.0
359,968 - GFF2761 0.45 +1.1
359,968 - GFF2761 0.45 +0.3
359,968 - GFF2761 0.45 +0.0
359,968 - GFF2761 0.45 -0.2
359,968 - GFF2761 0.45 -1.2
360,042 + GFF2761 0.50 -0.9
360,042 + GFF2761 0.50 +0.1
360,042 + GFF2761 0.50 -0.3
360,043 - GFF2761 0.50 -1.3
360,043 - GFF2761 0.50 -1.0
360,043 - GFF2761 0.50 -0.9
360,043 - GFF2761 0.50 +1.0
360,096 + GFF2761 0.54 -0.1
360,292 - GFF2761 0.67 -0.4
360,315 + GFF2761 0.69 -2.5
360,315 + GFF2761 0.69 +0.7
360,315 + GFF2761 0.69 -0.9
360,315 + GFF2761 0.69 -0.4
360,316 - GFF2761 0.69 +0.3
360,316 - GFF2761 0.69 -2.0
360,316 - GFF2761 0.69 -1.3
360,316 - GFF2761 0.69 +0.4
360,541 - GFF2761 0.84 -0.6
360,549 + GFF2761 0.85 +0.6
360,565 - GFF2761 0.86 -1.1
360,585 + GFF2761 0.87 -0.3
360,628 - -1.0
360,781 + +2.9
360,781 + -0.5
360,782 - -1.5
360,782 - +0.3
360,782 - -0.1
360,782 - -0.3
360,782 - -0.0
360,782 - -0.0
360,796 + -0.7
360,797 - -0.3
360,797 - +0.4
361,003 + GFF2762 0.12 -0.7
361,003 + GFF2762 0.12 +2.5
361,003 + GFF2762 0.12 -1.0
361,003 + GFF2762 0.12 +0.5
361,027 + GFF2762 0.13 -0.7
361,027 + GFF2762 0.13 -0.2
361,027 + GFF2762 0.13 -1.6
361,027 + GFF2762 0.13 -0.0
361,028 - GFF2762 0.13 -1.1
361,028 - GFF2762 0.13 +0.7
361,028 - GFF2762 0.13 -0.1
361,028 - GFF2762 0.13 +0.6
361,108 + GFF2762 0.18 -0.3
361,192 + GFF2762 0.22 -0.5
361,193 - GFF2762 0.22 +0.7
361,489 + GFF2762 0.38 -0.3
361,490 - GFF2762 0.38 +0.4
361,490 - GFF2762 0.38 -0.1
361,714 + GFF2762 0.50 +1.8
361,714 + GFF2762 0.50 -1.5
361,714 + GFF2762 0.50 -0.3
361,714 + GFF2762 0.50 +0.8
361,714 + GFF2762 0.50 -0.7
361,715 - GFF2762 0.50 +0.1
361,804 + GFF2762 0.55 -0.3
361,804 + GFF2762 0.55 -0.7
361,805 + GFF2762 0.55 +0.7
361,805 - GFF2762 0.55 -0.7
361,805 - GFF2762 0.55 -0.1
361,805 - GFF2762 0.55 +2.9
361,861 + GFF2762 0.58 +0.7
361,861 + GFF2762 0.58 +2.7
361,861 + GFF2762 0.58 +1.3
361,861 + GFF2762 0.58 -0.5
361,900 + GFF2762 0.60 +1.3
361,900 + GFF2762 0.60 -1.9
361,900 + GFF2762 0.60 -1.0
361,901 - GFF2762 0.60 -0.3
362,057 - GFF2762 0.68 -1.3
362,192 - GFF2762 0.75 +2.6
362,206 + GFF2762 0.76 +0.3
362,206 + GFF2762 0.76 +0.9
362,206 + GFF2762 0.76 +0.2
362,206 + GFF2762 0.76 +0.3
362,206 + GFF2762 0.76 -0.7
362,207 - GFF2762 0.76 +1.3
362,207 - GFF2762 0.76 +0.3
362,207 - GFF2762 0.76 -0.6
362,207 - GFF2762 0.76 -0.1
362,207 - GFF2762 0.76 -1.0
362,207 - GFF2762 0.76 +0.2
362,230 + GFF2762 0.77 -1.0
362,272 + GFF2762 0.80 -0.7
362,705 - -1.3
362,727 + -0.1
362,727 + -1.0
362,728 - +1.7
362,728 - +0.0
362,893 - GFF2763 0.10 -1.4
362,893 - GFF2763 0.10 -1.0
363,138 + GFF2763 0.39 +0.6
363,306 + GFF2763 0.59 +2.8
363,330 + GFF2763 0.62 +0.6
363,330 + GFF2763 0.62 +1.5
363,330 + GFF2763 0.62 +2.3
363,525 + GFF2763 0.85 -1.7
363,526 - GFF2763 0.86 -2.0

Or see this region's nucleotide sequence