Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2755 and GFF2756 are separated by 4 nucleotides GFF2756 and GFF2757 are separated by 7 nucleotides GFF2757 and GFF2758 are separated by 150 nucleotides
GFF2755 - Excinuclease ABC subunit A, at 351,663 to 354,785
GFF2755
GFF2756 - Outer membrane protein V, at 354,790 to 355,620
GFF2756
GFF2757 - hypothetical protein, at 355,628 to 356,185
GFF2757
GFF2758 - Adenylate cyclase (EC 4.6.1.1), at 356,336 to 357,889
GFF2758
Position (kb) 355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 354.784 kb on - strand at 354.792 kb on - strand at 354.792 kb on - strand at 354.803 kb on + strand at 354.899 kb on + strand, within GFF2756 at 354.900 kb on - strand, within GFF2756 at 355.023 kb on - strand, within GFF2756 at 355.037 kb on + strand, within GFF2756 at 355.037 kb on + strand, within GFF2756 at 355.106 kb on + strand, within GFF2756 at 355.106 kb on + strand, within GFF2756 at 355.107 kb on - strand, within GFF2756 at 355.175 kb on + strand, within GFF2756 at 355.175 kb on + strand, within GFF2756 at 355.713 kb on + strand, within GFF2757 at 355.713 kb on + strand, within GFF2757 at 355.713 kb on + strand, within GFF2757 at 355.713 kb on + strand, within GFF2757 at 355.713 kb on + strand, within GFF2757 at 355.713 kb on + strand, within GFF2757 at 355.714 kb on - strand, within GFF2757 at 355.714 kb on - strand, within GFF2757 at 355.720 kb on - strand, within GFF2757 at 355.773 kb on + strand, within GFF2757 at 355.774 kb on - strand, within GFF2757 at 355.774 kb on - strand, within GFF2757 at 355.896 kb on + strand, within GFF2757 at 355.896 kb on + strand, within GFF2757 at 355.897 kb on - strand, within GFF2757 at 355.897 kb on - strand, within GFF2757 at 355.897 kb on - strand, within GFF2757 at 355.897 kb on - strand, within GFF2757 at 355.899 kb on + strand, within GFF2757 at 355.899 kb on + strand, within GFF2757 at 355.935 kb on + strand, within GFF2757 at 356.247 kb on + strand at 356.256 kb on + strand at 356.257 kb on - strand at 356.257 kb on - strand at 356.257 kb on - strand at 356.257 kb on - strand at 356.257 kb on - strand at 356.272 kb on + strand at 356.450 kb on + strand at 356.451 kb on - strand at 356.451 kb on - strand at 356.451 kb on - strand at 356.451 kb on - strand at 356.451 kb on - strand at 356.451 kb on - strand at 356.951 kb on + strand, within GFF2758 at 356.952 kb on - strand, within GFF2758
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 354,784 - -1.0 354,792 - +0.3 354,792 - -0.1 354,803 + +0.9 354,899 + GFF2756 0.13 -0.5 354,900 - GFF2756 0.13 -0.1 355,023 - GFF2756 0.28 -0.0 355,037 + GFF2756 0.30 -0.7 355,037 + GFF2756 0.30 +0.1 355,106 + GFF2756 0.38 +0.3 355,106 + GFF2756 0.38 -1.2 355,107 - GFF2756 0.38 +0.1 355,175 + GFF2756 0.46 -0.7 355,175 + GFF2756 0.46 -0.2 355,713 + GFF2757 0.15 +0.1 355,713 + GFF2757 0.15 -1.3 355,713 + GFF2757 0.15 -1.2 355,713 + GFF2757 0.15 -0.3 355,713 + GFF2757 0.15 +0.5 355,713 + GFF2757 0.15 +0.9 355,714 - GFF2757 0.15 +0.3 355,714 - GFF2757 0.15 +0.2 355,720 - GFF2757 0.16 +0.4 355,773 + GFF2757 0.26 -1.3 355,774 - GFF2757 0.26 -0.8 355,774 - GFF2757 0.26 +2.5 355,896 + GFF2757 0.48 -0.8 355,896 + GFF2757 0.48 +1.6 355,897 - GFF2757 0.48 -0.4 355,897 - GFF2757 0.48 -2.0 355,897 - GFF2757 0.48 -0.1 355,897 - GFF2757 0.48 +3.5 355,899 + GFF2757 0.49 +1.6 355,899 + GFF2757 0.49 -0.7 355,935 + GFF2757 0.55 -0.5 356,247 + +0.3 356,256 + -0.8 356,257 - +0.1 356,257 - +0.5 356,257 - -0.1 356,257 - -1.3 356,257 - +1.8 356,272 + -0.4 356,450 + -3.5 356,451 - -1.4 356,451 - +1.3 356,451 - -0.6 356,451 - +1.3 356,451 - -0.5 356,451 - -0.0 356,951 + GFF2758 0.40 +1.6 356,952 - GFF2758 0.40 -0.5
Or see this region's nucleotide sequence