Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2733 and GFF2734 are separated by 0 nucleotides GFF2734 and GFF2735 overlap by 4 nucleotides GFF2735 and GFF2736 are separated by 6 nucleotides GFF2736 and GFF2737 overlap by 4 nucleotides
GFF2733 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 330,451 to 331,953
GFF2733
GFF2734 - hypothetical protein, at 331,954 to 332,163
GFF2734
GFF2735 - Small heat shock protein, at 332,160 to 332,552
GFF2735
GFF2736 - Glycine cleavage system transcriptional activator, at 332,559 to 333,428
GFF2736
GFF2737 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 333,425 to 334,273
GFF2737
Position (kb) 332
333 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 331.436 kb on + strand, within GFF2733 at 331.437 kb on - strand, within GFF2733 at 331.520 kb on + strand, within GFF2733 at 331.520 kb on + strand, within GFF2733 at 331.521 kb on - strand, within GFF2733 at 331.521 kb on - strand, within GFF2733 at 331.523 kb on + strand, within GFF2733 at 331.821 kb on - strand at 331.994 kb on + strand, within GFF2734 at 331.994 kb on - strand, within GFF2734 at 332.268 kb on + strand, within GFF2735 at 332.268 kb on + strand, within GFF2735 at 332.268 kb on + strand, within GFF2735 at 332.268 kb on + strand, within GFF2735 at 332.268 kb on + strand, within GFF2735 at 332.269 kb on - strand, within GFF2735 at 332.269 kb on - strand, within GFF2735 at 332.269 kb on - strand, within GFF2735 at 332.269 kb on - strand, within GFF2735 at 332.275 kb on + strand, within GFF2735 at 332.276 kb on - strand, within GFF2735 at 332.276 kb on - strand, within GFF2735 at 332.409 kb on + strand, within GFF2735 at 332.409 kb on + strand, within GFF2735 at 332.410 kb on - strand, within GFF2735 at 332.410 kb on - strand, within GFF2735 at 332.413 kb on - strand, within GFF2735 at 332.479 kb on - strand, within GFF2735 at 332.479 kb on - strand, within GFF2735 at 332.479 kb on - strand, within GFF2735 at 332.638 kb on + strand at 332.638 kb on + strand at 332.638 kb on + strand at 332.638 kb on + strand at 332.638 kb on + strand at 332.638 kb on + strand at 332.639 kb on - strand at 332.639 kb on - strand at 332.639 kb on - strand at 332.920 kb on + strand, within GFF2736 at 332.920 kb on + strand, within GFF2736 at 332.920 kb on + strand, within GFF2736 at 332.921 kb on - strand, within GFF2736 at 333.229 kb on + strand, within GFF2736 at 333.229 kb on + strand, within GFF2736 at 333.230 kb on - strand, within GFF2736
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 331,436 + GFF2733 0.66 +1.3 331,437 - GFF2733 0.66 +1.1 331,520 + GFF2733 0.71 +2.8 331,520 + GFF2733 0.71 +0.9 331,521 - GFF2733 0.71 +1.2 331,521 - GFF2733 0.71 -0.0 331,523 + GFF2733 0.71 +1.6 331,821 - +0.6 331,994 + GFF2734 0.19 +0.8 331,994 - GFF2734 0.19 +1.3 332,268 + GFF2735 0.27 -1.0 332,268 + GFF2735 0.27 -0.2 332,268 + GFF2735 0.27 -0.7 332,268 + GFF2735 0.27 -1.4 332,268 + GFF2735 0.27 -0.3 332,269 - GFF2735 0.28 -0.9 332,269 - GFF2735 0.28 +0.7 332,269 - GFF2735 0.28 +0.9 332,269 - GFF2735 0.28 -0.9 332,275 + GFF2735 0.29 -0.8 332,276 - GFF2735 0.30 -0.9 332,276 - GFF2735 0.30 +0.2 332,409 + GFF2735 0.63 -0.9 332,409 + GFF2735 0.63 +1.0 332,410 - GFF2735 0.64 -0.3 332,410 - GFF2735 0.64 -0.7 332,413 - GFF2735 0.64 +1.6 332,479 - GFF2735 0.81 -0.5 332,479 - GFF2735 0.81 -0.5 332,479 - GFF2735 0.81 -0.6 332,638 + -0.3 332,638 + +2.1 332,638 + +1.2 332,638 + +2.0 332,638 + -0.0 332,638 + +1.1 332,639 - -0.2 332,639 - -0.5 332,639 - +2.0 332,920 + GFF2736 0.41 +0.3 332,920 + GFF2736 0.41 +1.3 332,920 + GFF2736 0.41 +1.5 332,921 - GFF2736 0.42 +0.1 333,229 + GFF2736 0.77 +0.9 333,229 + GFF2736 0.77 -1.9 333,230 - GFF2736 0.77 +0.1
Or see this region's nucleotide sequence