Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2678 and GFF2679 are separated by 115 nucleotides GFF2679 and GFF2680 are separated by 3 nucleotides GFF2680 and GFF2681 are separated by 14 nucleotides
GFF2678 - Salicylate hydroxylase (EC 1.14.13.1), at 267,586 to 269,292
GFF2678
GFF2679 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 269,408 to 270,562
GFF2679
GFF2680 - cytosolic long-chain acyl-CoA thioester hydrolase family protein, at 270,566 to 271,039
GFF2680
GFF2681 - Sulfate permease family protein, at 271,054 to 272,724
GFF2681
Position (kb) 269
270
271 Strain fitness (log2 ratio) -1
0
1
2 at 268.541 kb on - strand, within GFF2678 at 268.699 kb on + strand, within GFF2678 at 268.700 kb on - strand, within GFF2678 at 268.742 kb on - strand, within GFF2678 at 268.874 kb on - strand, within GFF2678 at 268.967 kb on - strand, within GFF2678 at 269.344 kb on - strand at 269.438 kb on - strand at 269.873 kb on + strand, within GFF2679 at 269.874 kb on - strand, within GFF2679 at 269.958 kb on - strand, within GFF2679 at 270.117 kb on - strand, within GFF2679 at 270.117 kb on - strand, within GFF2679 at 270.135 kb on - strand, within GFF2679 at 270.173 kb on + strand, within GFF2679 at 270.176 kb on + strand, within GFF2679 at 270.176 kb on + strand, within GFF2679 at 270.176 kb on + strand, within GFF2679 at 270.177 kb on - strand, within GFF2679 at 270.583 kb on - strand at 270.890 kb on + strand, within GFF2680 at 270.891 kb on - strand, within GFF2680 at 270.894 kb on + strand, within GFF2680 at 270.895 kb on - strand, within GFF2680 at 271.184 kb on + strand at 271.397 kb on + strand, within GFF2681 at 271.547 kb on + strand, within GFF2681
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 268,541 - GFF2678 0.56 -1.2 268,699 + GFF2678 0.65 +0.9 268,700 - GFF2678 0.65 -0.3 268,742 - GFF2678 0.68 -0.6 268,874 - GFF2678 0.75 -0.2 268,967 - GFF2678 0.81 +1.1 269,344 - -0.5 269,438 - -0.5 269,873 + GFF2679 0.40 +0.4 269,874 - GFF2679 0.40 -0.9 269,958 - GFF2679 0.48 -1.2 270,117 - GFF2679 0.61 +0.6 270,117 - GFF2679 0.61 -1.3 270,135 - GFF2679 0.63 -0.5 270,173 + GFF2679 0.66 -0.7 270,176 + GFF2679 0.66 +1.1 270,176 + GFF2679 0.66 -0.1 270,176 + GFF2679 0.66 -1.0 270,177 - GFF2679 0.67 -1.0 270,583 - +2.3 270,890 + GFF2680 0.68 +1.3 270,891 - GFF2680 0.69 -0.6 270,894 + GFF2680 0.69 +2.1 270,895 - GFF2680 0.69 +0.3 271,184 + +1.0 271,397 + GFF2681 0.21 -1.0 271,547 + GFF2681 0.30 +0.3
Or see this region's nucleotide sequence