Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2671 and GFF2672 overlap by 4 nucleotides GFF2672 and GFF2673 are separated by 109 nucleotides GFF2673 and GFF2674 are separated by 105 nucleotides GFF2674 and GFF2675 are separated by 112 nucleotides
GFF2671 - hypothetical protein, at 262,467 to 262,829
GFF2671
GFF2672 - hypothetical protein, at 262,826 to 263,098
GFF2672
GFF2673 - hypothetical protein, at 263,208 to 263,567
GFF2673
GFF2674 - Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme, at 263,673 to 264,599
GFF2674
GFF2675 - Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83), at 264,712 to 265,800
GFF2675
Position (kb) 263
264
265 Strain fitness (log2 ratio) -2
-1
0
1 at 262.881 kb on + strand, within GFF2672 at 262.881 kb on + strand, within GFF2672 at 262.881 kb on + strand, within GFF2672 at 262.881 kb on + strand, within GFF2672 at 262.881 kb on + strand, within GFF2672 at 262.882 kb on - strand, within GFF2672 at 262.882 kb on - strand, within GFF2672 at 263.160 kb on + strand at 263.161 kb on - strand at 263.161 kb on - strand at 263.260 kb on + strand, within GFF2673 at 263.260 kb on + strand, within GFF2673 at 263.261 kb on - strand, within GFF2673 at 263.389 kb on + strand, within GFF2673 at 263.410 kb on + strand, within GFF2673 at 263.410 kb on + strand, within GFF2673 at 263.410 kb on + strand, within GFF2673 at 263.411 kb on - strand, within GFF2673 at 263.411 kb on - strand, within GFF2673 at 263.585 kb on + strand at 263.586 kb on - strand at 263.596 kb on + strand at 263.596 kb on + strand at 263.674 kb on + strand at 263.836 kb on + strand, within GFF2674 at 263.836 kb on + strand, within GFF2674 at 263.995 kb on + strand, within GFF2674 at 263.996 kb on - strand, within GFF2674 at 264.079 kb on + strand, within GFF2674 at 264.080 kb on - strand, within GFF2674 at 264.397 kb on + strand, within GFF2674 at 264.398 kb on - strand, within GFF2674 at 264.398 kb on - strand, within GFF2674 at 264.672 kb on + strand at 264.672 kb on + strand at 264.673 kb on - strand at 264.721 kb on + strand at 264.721 kb on + strand at 264.722 kb on - strand at 264.722 kb on - strand at 264.856 kb on + strand, within GFF2675 at 264.856 kb on + strand, within GFF2675 at 264.860 kb on - strand, within GFF2675
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 262,881 + GFF2672 0.20 +0.1 262,881 + GFF2672 0.20 -1.0 262,881 + GFF2672 0.20 -0.2 262,881 + GFF2672 0.20 +0.9 262,881 + GFF2672 0.20 +0.3 262,882 - GFF2672 0.21 -0.2 262,882 - GFF2672 0.21 +1.6 263,160 + +1.7 263,161 - -0.7 263,161 - -0.3 263,260 + GFF2673 0.14 -0.0 263,260 + GFF2673 0.14 +1.0 263,261 - GFF2673 0.15 -0.3 263,389 + GFF2673 0.50 +1.3 263,410 + GFF2673 0.56 -0.3 263,410 + GFF2673 0.56 +0.2 263,410 + GFF2673 0.56 -0.7 263,411 - GFF2673 0.56 -0.3 263,411 - GFF2673 0.56 -1.2 263,585 + -1.5 263,586 - +0.5 263,596 + -0.0 263,596 + -0.5 263,674 + -1.4 263,836 + GFF2674 0.18 -1.9 263,836 + GFF2674 0.18 -1.3 263,995 + GFF2674 0.35 -0.3 263,996 - GFF2674 0.35 -0.2 264,079 + GFF2674 0.44 -0.4 264,080 - GFF2674 0.44 -0.6 264,397 + GFF2674 0.78 -0.3 264,398 - GFF2674 0.78 -1.6 264,398 - GFF2674 0.78 -0.7 264,672 + +0.2 264,672 + -0.1 264,673 - +0.7 264,721 + +0.2 264,721 + +0.5 264,722 - -0.3 264,722 - -0.3 264,856 + GFF2675 0.13 -1.0 264,856 + GFF2675 0.13 -1.0 264,860 - GFF2675 0.14 +0.1
Or see this region's nucleotide sequence