Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF265

Experiment: Ying_all64 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF264 and GFF265 are separated by 130 nucleotidesGFF265 and GFF266 overlap by 4 nucleotidesGFF266 and GFF267 overlap by 9 nucleotides GFF264 - Sulfur oxidation protein SoxB, at 277,895 to 279,619 GFF264 GFF265 - Outer membrane protein (porin), at 279,750 to 280,721 GFF265 GFF266 - hypothetical protein, at 280,718 to 280,948 GFF266 GFF267 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 280,940 to 282,187 GFF267 Position (kb) 279 280 281Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 278.943 kb on - strand, within GFF264at 279.072 kb on - strand, within GFF264at 279.206 kb on + strand, within GFF264at 279.206 kb on + strand, within GFF264at 279.206 kb on + strand, within GFF264at 279.207 kb on - strand, within GFF264at 279.240 kb on - strand, within GFF264at 279.329 kb on + strand, within GFF264at 279.329 kb on + strand, within GFF264at 279.329 kb on + strand, within GFF264at 279.329 kb on + strand, within GFF264at 279.330 kb on - strand, within GFF264at 279.330 kb on - strand, within GFF264at 279.332 kb on + strand, within GFF264at 279.332 kb on + strand, within GFF264at 279.332 kb on + strand, within GFF264at 279.333 kb on - strand, within GFF264at 279.333 kb on - strand, within GFF264at 279.333 kb on - strand, within GFF264at 279.333 kb on - strand, within GFF264at 279.333 kb on - strand, within GFF264at 279.333 kb on - strand, within GFF264at 279.374 kb on + strand, within GFF264at 279.374 kb on + strand, within GFF264at 279.375 kb on - strand, within GFF264at 279.375 kb on - strand, within GFF264at 279.375 kb on - strand, within GFF264at 279.375 kb on - strand, within GFF264at 279.375 kb on - strand, within GFF264at 279.458 kb on + strandat 279.458 kb on + strandat 279.458 kb on + strandat 279.458 kb on + strandat 279.458 kb on + strandat 279.458 kb on + strandat 279.458 kb on + strandat 279.459 kb on - strandat 279.459 kb on - strandat 279.459 kb on - strandat 279.459 kb on - strandat 279.459 kb on - strandat 279.459 kb on - strandat 279.459 kb on - strandat 279.531 kb on - strandat 279.688 kb on + strandat 279.688 kb on + strandat 279.689 kb on - strandat 279.689 kb on - strandat 279.695 kb on + strandat 279.695 kb on + strandat 279.696 kb on - strandat 279.696 kb on - strandat 279.696 kb on - strandat 279.696 kb on - strandat 279.696 kb on - strandat 279.696 kb on - strandat 279.778 kb on + strandat 279.778 kb on + strandat 279.778 kb on + strandat 279.779 kb on - strandat 279.779 kb on - strandat 279.779 kb on - strandat 279.779 kb on - strandat 279.779 kb on - strandat 279.835 kb on + strandat 279.835 kb on + strandat 279.835 kb on + strandat 279.836 kb on - strandat 279.836 kb on - strandat 279.844 kb on + strandat 279.844 kb on + strandat 279.844 kb on + strandat 279.845 kb on - strandat 279.845 kb on - strandat 279.845 kb on - strandat 279.871 kb on + strand, within GFF265at 279.871 kb on + strand, within GFF265at 279.871 kb on + strand, within GFF265at 279.872 kb on - strand, within GFF265at 279.872 kb on - strand, within GFF265at 279.872 kb on - strand, within GFF265at 279.872 kb on - strand, within GFF265at 279.872 kb on - strand, within GFF265at 279.872 kb on - strand, within GFF265at 279.872 kb on - strand, within GFF265at 279.872 kb on - strand, within GFF265at 279.940 kb on + strand, within GFF265at 279.940 kb on + strand, within GFF265at 279.940 kb on + strand, within GFF265at 279.940 kb on + strand, within GFF265at 279.940 kb on + strand, within GFF265at 279.946 kb on + strand, within GFF265at 279.946 kb on + strand, within GFF265at 279.946 kb on + strand, within GFF265at 279.947 kb on - strand, within GFF265at 279.947 kb on - strand, within GFF265at 279.947 kb on - strand, within GFF265at 279.997 kb on + strand, within GFF265at 279.998 kb on - strand, within GFF265at 279.998 kb on - strand, within GFF265at 280.072 kb on + strand, within GFF265at 280.072 kb on + strand, within GFF265at 280.073 kb on - strand, within GFF265at 280.073 kb on - strand, within GFF265at 280.073 kb on - strand, within GFF265at 280.073 kb on - strand, within GFF265at 280.093 kb on + strand, within GFF265at 280.093 kb on + strand, within GFF265at 280.093 kb on + strand, within GFF265at 280.093 kb on + strand, within GFF265at 280.094 kb on - strand, within GFF265at 280.094 kb on - strand, within GFF265at 280.157 kb on - strand, within GFF265at 280.213 kb on + strand, within GFF265at 280.213 kb on + strand, within GFF265at 280.214 kb on - strand, within GFF265at 280.214 kb on - strand, within GFF265at 280.256 kb on - strand, within GFF265at 280.285 kb on + strand, within GFF265at 280.306 kb on + strand, within GFF265at 280.307 kb on - strand, within GFF265at 280.307 kb on - strand, within GFF265at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.796 kb on + strand, within GFF266at 280.797 kb on - strand, within GFF266at 280.797 kb on - strand, within GFF266at 280.797 kb on - strand, within GFF266at 280.797 kb on - strand, within GFF266at 280.797 kb on - strand, within GFF266at 280.861 kb on + strand, within GFF266at 280.861 kb on + strand, within GFF266at 280.861 kb on + strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.862 kb on - strand, within GFF266at 280.917 kb on + strand, within GFF266at 280.917 kb on + strand, within GFF266at 280.917 kb on + strand, within GFF266at 280.918 kb on - strand, within GFF266at 280.924 kb on + strand, within GFF266at 280.924 kb on + strand, within GFF266at 280.924 kb on + strand, within GFF266at 280.924 kb on + strand, within GFF266at 280.924 kb on + strand, within GFF266at 280.924 kb on + strand, within GFF266at 280.925 kb on - strand, within GFF266at 280.925 kb on - strand, within GFF266at 280.925 kb on - strand, within GFF266at 280.925 kb on - strand, within GFF266at 280.925 kb on - strand, within GFF266at 280.925 kb on - strand, within GFF266at 281.063 kb on + strandat 281.105 kb on + strand, within GFF267at 281.105 kb on + strand, within GFF267at 281.105 kb on + strand, within GFF267at 281.105 kb on + strand, within GFF267at 281.105 kb on + strand, within GFF267at 281.106 kb on - strand, within GFF267at 281.171 kb on + strand, within GFF267at 281.172 kb on - strand, within GFF267at 281.216 kb on + strand, within GFF267at 281.216 kb on + strand, within GFF267at 281.216 kb on + strand, within GFF267at 281.216 kb on + strand, within GFF267at 281.217 kb on - strand, within GFF267at 281.217 kb on - strand, within GFF267at 281.217 kb on - strand, within GFF267at 281.217 kb on - strand, within GFF267at 281.219 kb on + strand, within GFF267at 281.219 kb on + strand, within GFF267at 281.220 kb on - strand, within GFF267at 281.264 kb on + strand, within GFF267at 281.264 kb on + strand, within GFF267at 281.351 kb on + strand, within GFF267at 281.351 kb on + strand, within GFF267at 281.352 kb on - strand, within GFF267at 281.352 kb on - strand, within GFF267at 281.364 kb on - strand, within GFF267at 281.555 kb on + strand, within GFF267at 281.555 kb on + strand, within GFF267

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3
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278,943 - GFF264 0.61 +0.8
279,072 - GFF264 0.68 +0.6
279,206 + GFF264 0.76 -0.1
279,206 + GFF264 0.76 +0.9
279,206 + GFF264 0.76 +3.9
279,207 - GFF264 0.76 +1.5
279,240 - GFF264 0.78 +0.5
279,329 + GFF264 0.83 -0.2
279,329 + GFF264 0.83 -0.0
279,329 + GFF264 0.83 -0.5
279,329 + GFF264 0.83 +1.5
279,330 - GFF264 0.83 -0.1
279,330 - GFF264 0.83 -1.0
279,332 + GFF264 0.83 -0.8
279,332 + GFF264 0.83 +0.4
279,332 + GFF264 0.83 +0.0
279,333 - GFF264 0.83 -0.4
279,333 - GFF264 0.83 -0.1
279,333 - GFF264 0.83 -0.2
279,333 - GFF264 0.83 -1.2
279,333 - GFF264 0.83 -1.1
279,333 - GFF264 0.83 -0.1
279,374 + GFF264 0.86 +0.4
279,374 + GFF264 0.86 +0.7
279,375 - GFF264 0.86 +0.3
279,375 - GFF264 0.86 -0.4
279,375 - GFF264 0.86 +1.2
279,375 - GFF264 0.86 -0.6
279,375 - GFF264 0.86 -0.5
279,458 + -0.4
279,458 + -1.6
279,458 + +0.2
279,458 + +0.6
279,458 + +0.0
279,458 + -0.9
279,458 + -0.5
279,459 - -0.1
279,459 - -2.1
279,459 - +0.2
279,459 - -0.1
279,459 - -0.1
279,459 - -1.0
279,459 - +1.0
279,531 - +2.1
279,688 + +0.9
279,688 + -0.8
279,689 - +2.1
279,689 - -0.1
279,695 + -0.2
279,695 + -0.4
279,696 - -0.1
279,696 - +0.3
279,696 - -0.3
279,696 - +0.8
279,696 - -0.8
279,696 - -0.1
279,778 + +1.4
279,778 + -1.0
279,778 + -0.2
279,779 - +2.3
279,779 - +0.4
279,779 - +0.8
279,779 - -1.3
279,779 - +0.2
279,835 + +1.3
279,835 + +0.4
279,835 + -0.8
279,836 - -1.2
279,836 - +0.7
279,844 + +1.8
279,844 + -0.1
279,844 + +0.0
279,845 - -0.0
279,845 - -1.9
279,845 - -0.1
279,871 + GFF265 0.12 -1.1
279,871 + GFF265 0.12 +1.1
279,871 + GFF265 0.12 +4.7
279,872 - GFF265 0.13 -0.8
279,872 - GFF265 0.13 +0.4
279,872 - GFF265 0.13 +1.4
279,872 - GFF265 0.13 +1.2
279,872 - GFF265 0.13 -1.2
279,872 - GFF265 0.13 -0.4
279,872 - GFF265 0.13 -0.6
279,872 - GFF265 0.13 +0.4
279,940 + GFF265 0.20 -0.0
279,940 + GFF265 0.20 -1.1
279,940 + GFF265 0.20 -1.2
279,940 + GFF265 0.20 -0.1
279,940 + GFF265 0.20 +0.7
279,946 + GFF265 0.20 -0.1
279,946 + GFF265 0.20 -1.1
279,946 + GFF265 0.20 +0.6
279,947 - GFF265 0.20 -0.7
279,947 - GFF265 0.20 -1.4
279,947 - GFF265 0.20 +0.8
279,997 + GFF265 0.25 -0.5
279,998 - GFF265 0.26 -1.0
279,998 - GFF265 0.26 -0.3
280,072 + GFF265 0.33 +0.4
280,072 + GFF265 0.33 -1.4
280,073 - GFF265 0.33 +2.7
280,073 - GFF265 0.33 -0.7
280,073 - GFF265 0.33 +0.8
280,073 - GFF265 0.33 -0.9
280,093 + GFF265 0.35 -0.3
280,093 + GFF265 0.35 +0.0
280,093 + GFF265 0.35 +0.4
280,093 + GFF265 0.35 -0.6
280,094 - GFF265 0.35 -0.1
280,094 - GFF265 0.35 -1.3
280,157 - GFF265 0.42 -0.3
280,213 + GFF265 0.48 +1.4
280,213 + GFF265 0.48 -1.2
280,214 - GFF265 0.48 +1.4
280,214 - GFF265 0.48 -0.5
280,256 - GFF265 0.52 +2.3
280,285 + GFF265 0.55 -1.1
280,306 + GFF265 0.57 -0.3
280,307 - GFF265 0.57 +0.7
280,307 - GFF265 0.57 -0.3
280,796 + GFF266 0.34 -0.6
280,796 + GFF266 0.34 -0.4
280,796 + GFF266 0.34 +3.4
280,796 + GFF266 0.34 +1.6
280,796 + GFF266 0.34 -0.1
280,796 + GFF266 0.34 -0.6
280,796 + GFF266 0.34 +0.7
280,796 + GFF266 0.34 -0.4
280,797 - GFF266 0.34 +0.9
280,797 - GFF266 0.34 -1.5
280,797 - GFF266 0.34 +0.4
280,797 - GFF266 0.34 -0.7
280,797 - GFF266 0.34 +0.4
280,861 + GFF266 0.62 -0.2
280,861 + GFF266 0.62 -2.1
280,861 + GFF266 0.62 +0.0
280,862 - GFF266 0.62 -0.6
280,862 - GFF266 0.62 -0.3
280,862 - GFF266 0.62 -0.6
280,862 - GFF266 0.62 -1.7
280,862 - GFF266 0.62 +0.6
280,862 - GFF266 0.62 -0.7
280,862 - GFF266 0.62 -0.0
280,862 - GFF266 0.62 +1.7
280,917 + GFF266 0.86 +0.2
280,917 + GFF266 0.86 -0.8
280,917 + GFF266 0.86 +1.1
280,918 - GFF266 0.87 +0.6
280,924 + GFF266 0.89 -1.8
280,924 + GFF266 0.89 -2.0
280,924 + GFF266 0.89 -0.3
280,924 + GFF266 0.89 -1.8
280,924 + GFF266 0.89 +0.4
280,924 + GFF266 0.89 -1.2
280,925 - GFF266 0.90 +1.1
280,925 - GFF266 0.90 +0.9
280,925 - GFF266 0.90 -0.2
280,925 - GFF266 0.90 -2.6
280,925 - GFF266 0.90 +0.8
280,925 - GFF266 0.90 -0.6
281,063 + -0.1
281,105 + GFF267 0.13 +0.9
281,105 + GFF267 0.13 +1.4
281,105 + GFF267 0.13 +1.0
281,105 + GFF267 0.13 -0.5
281,105 + GFF267 0.13 +0.7
281,106 - GFF267 0.13 +0.7
281,171 + GFF267 0.19 -0.2
281,172 - GFF267 0.19 +0.0
281,216 + GFF267 0.22 -0.4
281,216 + GFF267 0.22 -0.6
281,216 + GFF267 0.22 -1.2
281,216 + GFF267 0.22 +0.3
281,217 - GFF267 0.22 +0.2
281,217 - GFF267 0.22 +0.2
281,217 - GFF267 0.22 -0.5
281,217 - GFF267 0.22 -1.3
281,219 + GFF267 0.22 +0.8
281,219 + GFF267 0.22 +0.4
281,220 - GFF267 0.22 +0.2
281,264 + GFF267 0.26 +0.4
281,264 + GFF267 0.26 +2.2
281,351 + GFF267 0.33 -0.2
281,351 + GFF267 0.33 +1.4
281,352 - GFF267 0.33 +1.8
281,352 - GFF267 0.33 -0.2
281,364 - GFF267 0.34 +0.8
281,555 + GFF267 0.49 -0.9
281,555 + GFF267 0.49 -0.0

Or see this region's nucleotide sequence