Experiment: Ying_all64 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2629 and GFF2630 are separated by 489 nucleotides GFF2630 and GFF2631 are separated by 155 nucleotides
GFF2629 - Probable VANILLIN dehydrogenase oxidoreductase protein (EC 1.-.-.-), at 221,548 to 223,002
GFF2629
GFF2630 - Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72), at 223,492 to 225,051
GFF2630
GFF2631 - Type I restriction-modification system, specificity subunit S (EC 3.1.21.3), at 225,207 to 226,274
GFF2631
Position (kb) 223
224
225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 222.676 kb on + strand, within GFF2629 at 222.763 kb on + strand, within GFF2629 at 222.763 kb on + strand, within GFF2629 at 222.764 kb on - strand, within GFF2629 at 223.202 kb on + strand at 223.203 kb on - strand at 223.203 kb on - strand at 223.224 kb on + strand at 223.264 kb on + strand at 223.265 kb on - strand at 223.290 kb on + strand at 223.291 kb on - strand at 223.291 kb on - strand at 223.291 kb on - strand at 223.319 kb on + strand at 223.320 kb on - strand at 223.320 kb on - strand at 223.359 kb on + strand at 223.359 kb on + strand at 223.360 kb on - strand at 223.360 kb on - strand at 223.360 kb on - strand at 223.360 kb on - strand at 223.371 kb on + strand at 223.392 kb on + strand at 223.392 kb on + strand at 223.392 kb on + strand at 223.392 kb on + strand at 223.393 kb on - strand at 223.393 kb on - strand at 223.393 kb on - strand at 223.396 kb on + strand at 223.397 kb on - strand at 223.397 kb on - strand at 223.427 kb on + strand at 223.428 kb on - strand at 223.445 kb on + strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.467 kb on + strand at 223.468 kb on - strand at 223.468 kb on - strand at 223.468 kb on - strand at 223.468 kb on - strand at 223.468 kb on - strand at 223.588 kb on + strand at 223.588 kb on + strand at 223.588 kb on + strand at 223.588 kb on + strand at 223.589 kb on - strand at 223.589 kb on - strand at 223.589 kb on - strand at 223.589 kb on - strand at 223.589 kb on - strand at 223.609 kb on + strand at 223.639 kb on + strand at 223.639 kb on + strand at 223.640 kb on - strand at 223.640 kb on - strand at 223.640 kb on - strand at 223.670 kb on - strand, within GFF2630 at 223.723 kb on - strand, within GFF2630 at 223.738 kb on + strand, within GFF2630 at 223.739 kb on - strand, within GFF2630 at 223.739 kb on - strand, within GFF2630 at 223.739 kb on - strand, within GFF2630 at 223.739 kb on - strand, within GFF2630 at 223.739 kb on - strand, within GFF2630 at 223.739 kb on - strand, within GFF2630 at 223.760 kb on + strand, within GFF2630 at 223.761 kb on - strand, within GFF2630 at 223.766 kb on + strand, within GFF2630 at 223.767 kb on - strand, within GFF2630 at 223.767 kb on - strand, within GFF2630 at 223.767 kb on - strand, within GFF2630 at 223.780 kb on - strand, within GFF2630 at 224.029 kb on + strand, within GFF2630 at 224.029 kb on + strand, within GFF2630 at 224.030 kb on - strand, within GFF2630 at 224.030 kb on - strand, within GFF2630 at 224.050 kb on + strand, within GFF2630 at 224.050 kb on + strand, within GFF2630 at 224.051 kb on - strand, within GFF2630 at 224.051 kb on - strand, within GFF2630 at 224.131 kb on + strand, within GFF2630 at 224.131 kb on + strand, within GFF2630 at 224.132 kb on - strand, within GFF2630 at 224.132 kb on - strand, within GFF2630 at 224.159 kb on - strand, within GFF2630 at 224.159 kb on - strand, within GFF2630 at 224.159 kb on - strand, within GFF2630 at 224.189 kb on + strand, within GFF2630 at 224.189 kb on + strand, within GFF2630 at 224.266 kb on + strand, within GFF2630 at 224.266 kb on + strand, within GFF2630 at 224.286 kb on + strand, within GFF2630 at 224.286 kb on + strand, within GFF2630 at 224.286 kb on + strand, within GFF2630 at 224.286 kb on + strand, within GFF2630 at 224.286 kb on + strand, within GFF2630 at 224.286 kb on + strand, within GFF2630 at 224.286 kb on + strand, within GFF2630 at 224.287 kb on - strand, within GFF2630 at 224.287 kb on - strand, within GFF2630 at 224.287 kb on - strand, within GFF2630 at 224.287 kb on - strand, within GFF2630 at 224.308 kb on + strand, within GFF2630 at 224.308 kb on + strand, within GFF2630 at 224.308 kb on + strand, within GFF2630 at 224.308 kb on + strand, within GFF2630 at 224.309 kb on - strand, within GFF2630 at 224.401 kb on + strand, within GFF2630 at 224.401 kb on + strand, within GFF2630 at 224.402 kb on - strand, within GFF2630 at 224.402 kb on - strand, within GFF2630 at 224.481 kb on + strand, within GFF2630 at 224.481 kb on + strand, within GFF2630 at 224.481 kb on + strand, within GFF2630 at 224.524 kb on + strand, within GFF2630 at 224.524 kb on + strand, within GFF2630 at 224.524 kb on + strand, within GFF2630 at 224.524 kb on + strand, within GFF2630 at 224.524 kb on + strand, within GFF2630 at 224.525 kb on - strand, within GFF2630 at 224.525 kb on - strand, within GFF2630 at 224.525 kb on - strand, within GFF2630 at 224.525 kb on - strand, within GFF2630 at 224.575 kb on + strand, within GFF2630 at 224.575 kb on + strand, within GFF2630 at 224.576 kb on - strand, within GFF2630 at 224.608 kb on + strand, within GFF2630 at 224.608 kb on + strand, within GFF2630 at 224.609 kb on - strand, within GFF2630 at 224.619 kb on + strand, within GFF2630 at 224.626 kb on + strand, within GFF2630 at 224.626 kb on + strand, within GFF2630 at 224.626 kb on + strand, within GFF2630 at 224.626 kb on + strand, within GFF2630 at 224.626 kb on + strand, within GFF2630 at 224.626 kb on + strand, within GFF2630 at 224.626 kb on + strand, within GFF2630 at 224.626 kb on + strand, within GFF2630 at 224.627 kb on - strand, within GFF2630 at 224.627 kb on - strand, within GFF2630 at 224.627 kb on - strand, within GFF2630 at 224.627 kb on - strand, within GFF2630 at 224.627 kb on - strand, within GFF2630 at 224.627 kb on - strand, within GFF2630 at 224.627 kb on - strand, within GFF2630 at 224.735 kb on + strand, within GFF2630 at 224.736 kb on + strand, within GFF2630 at 224.736 kb on - strand, within GFF2630 at 224.736 kb on - strand, within GFF2630 at 224.736 kb on - strand, within GFF2630 at 224.884 kb on + strand, within GFF2630 at 224.884 kb on + strand, within GFF2630 at 224.884 kb on + strand, within GFF2630 at 224.884 kb on + strand, within GFF2630 at 224.884 kb on - strand, within GFF2630 at 224.885 kb on - strand, within GFF2630 at 224.885 kb on - strand, within GFF2630 at 224.905 kb on + strand at 224.905 kb on + strand at 224.905 kb on + strand at 224.906 kb on - strand at 224.906 kb on - strand at 224.906 kb on - strand at 224.906 kb on - strand at 224.906 kb on - strand at 224.906 kb on - strand at 224.906 kb on - strand at 224.906 kb on - strand at 224.906 kb on - strand at 224.906 kb on - strand at 224.906 kb on - strand at 224.906 kb on - strand at 225.125 kb on + strand at 225.126 kb on - strand at 225.126 kb on - strand at 225.126 kb on - strand at 225.126 kb on - strand at 225.178 kb on - strand at 225.187 kb on - strand at 225.261 kb on + strand at 225.262 kb on - strand at 225.262 kb on - strand at 225.262 kb on - strand at 225.348 kb on - strand, within GFF2631 at 225.358 kb on - strand, within GFF2631 at 225.515 kb on - strand, within GFF2631 at 225.569 kb on + strand, within GFF2631 at 225.569 kb on + strand, within GFF2631 at 225.590 kb on + strand, within GFF2631 at 225.591 kb on - strand, within GFF2631 at 225.600 kb on + strand, within GFF2631 at 225.601 kb on - strand, within GFF2631 at 225.601 kb on - strand, within GFF2631 at 225.606 kb on + strand, within GFF2631 at 225.606 kb on + strand, within GFF2631 at 225.607 kb on - strand, within GFF2631 at 225.607 kb on - strand, within GFF2631 at 225.609 kb on + strand, within GFF2631 at 225.610 kb on - strand, within GFF2631 at 225.622 kb on + strand, within GFF2631 at 225.622 kb on + strand, within GFF2631 at 225.622 kb on + strand, within GFF2631 at 225.623 kb on - strand, within GFF2631 at 225.680 kb on - strand, within GFF2631 at 225.698 kb on + strand, within GFF2631 at 225.699 kb on - strand, within GFF2631 at 225.699 kb on - strand, within GFF2631 at 225.741 kb on + strand, within GFF2631 at 225.753 kb on + strand, within GFF2631 at 225.753 kb on + strand, within GFF2631 at 225.753 kb on + strand, within GFF2631 at 225.753 kb on + strand, within GFF2631 at 225.753 kb on + strand, within GFF2631 at 225.754 kb on - strand, within GFF2631 at 225.754 kb on - strand, within GFF2631 at 225.806 kb on + strand, within GFF2631 at 225.807 kb on - strand, within GFF2631 at 225.807 kb on - strand, within GFF2631 at 225.807 kb on - strand, within GFF2631 at 225.810 kb on + strand, within GFF2631 at 225.812 kb on + strand, within GFF2631 at 225.812 kb on + strand, within GFF2631 at 225.812 kb on + strand, within GFF2631 at 225.812 kb on + strand, within GFF2631 at 225.812 kb on + strand, within GFF2631 at 225.812 kb on + strand, within GFF2631 at 225.812 kb on + strand, within GFF2631 at 225.812 kb on + strand, within GFF2631 at 225.813 kb on - strand, within GFF2631 at 225.813 kb on - strand, within GFF2631 at 225.813 kb on - strand, within GFF2631 at 225.813 kb on - strand, within GFF2631 at 225.813 kb on - strand, within GFF2631 at 225.813 kb on - strand, within GFF2631 at 225.813 kb on - strand, within GFF2631 at 225.813 kb on - strand, within GFF2631 at 225.813 kb on - strand, within GFF2631 at 225.825 kb on + strand, within GFF2631 at 225.826 kb on - strand, within GFF2631 at 225.936 kb on + strand, within GFF2631 at 225.936 kb on + strand, within GFF2631 at 225.937 kb on - strand, within GFF2631 at 225.937 kb on - strand, within GFF2631 at 225.937 kb on - strand, within GFF2631 at 225.937 kb on - strand, within GFF2631 at 225.975 kb on + strand, within GFF2631 at 225.975 kb on + strand, within GFF2631 at 225.975 kb on + strand, within GFF2631 at 225.975 kb on + strand, within GFF2631 at 225.976 kb on - strand, within GFF2631 at 225.976 kb on - strand, within GFF2631 at 225.976 kb on - strand, within GFF2631 at 225.996 kb on + strand, within GFF2631 at 225.996 kb on + strand, within GFF2631 at 225.996 kb on + strand, within GFF2631 at 225.996 kb on + strand, within GFF2631 at 225.997 kb on - strand, within GFF2631 at 225.997 kb on - strand, within GFF2631
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 3 remove 222,676 + GFF2629 0.78 +0.0 222,763 + GFF2629 0.84 +0.1 222,763 + GFF2629 0.84 +0.3 222,764 - GFF2629 0.84 +1.0 223,202 + -0.7 223,203 - +0.1 223,203 - -0.5 223,224 + -1.0 223,264 + -1.7 223,265 - -0.3 223,290 + +0.6 223,291 - +0.4 223,291 - -0.5 223,291 - -0.3 223,319 + +1.3 223,320 - -0.3 223,320 - -0.1 223,359 + -1.1 223,359 + -0.3 223,360 - -0.2 223,360 - -1.3 223,360 - +0.9 223,360 - -0.6 223,371 + +1.9 223,392 + -0.2 223,392 + -0.4 223,392 + +0.3 223,392 + +0.3 223,393 - +0.0 223,393 - -0.3 223,393 - +1.3 223,396 + -0.6 223,397 - -0.7 223,397 - -0.2 223,427 + +1.1 223,428 - -1.7 223,445 + +0.3 223,467 + +0.2 223,467 + +1.0 223,467 + +0.0 223,467 + -1.2 223,467 + +1.9 223,468 - -1.0 223,468 - +2.3 223,468 - +0.8 223,468 - -1.4 223,468 - +0.1 223,588 + +0.1 223,588 + +1.0 223,588 + +1.2 223,588 + -1.5 223,589 - -0.3 223,589 - +1.3 223,589 - +1.4 223,589 - +0.5 223,589 - +0.2 223,609 + -0.7 223,639 + +0.2 223,639 + -2.3 223,640 - +1.0 223,640 - +2.0 223,640 - -3.2 223,670 - GFF2630 0.11 -1.3 223,723 - GFF2630 0.15 -0.1 223,738 + GFF2630 0.16 +2.3 223,739 - GFF2630 0.16 -0.3 223,739 - GFF2630 0.16 +0.1 223,739 - GFF2630 0.16 +1.7 223,739 - GFF2630 0.16 +0.7 223,739 - GFF2630 0.16 +0.9 223,739 - GFF2630 0.16 -0.4 223,760 + GFF2630 0.17 -1.1 223,761 - GFF2630 0.17 +0.5 223,766 + GFF2630 0.18 -0.7 223,767 - GFF2630 0.18 +1.0 223,767 - GFF2630 0.18 +0.5 223,767 - GFF2630 0.18 +0.2 223,780 - GFF2630 0.18 -1.0 224,029 + GFF2630 0.34 -0.8 224,029 + GFF2630 0.34 -0.7 224,030 - GFF2630 0.34 -0.8 224,030 - GFF2630 0.34 -0.6 224,050 + GFF2630 0.36 -1.3 224,050 + GFF2630 0.36 +0.7 224,051 - GFF2630 0.36 -0.3 224,051 - GFF2630 0.36 -0.1 224,131 + GFF2630 0.41 -0.7 224,131 + GFF2630 0.41 -0.3 224,132 - GFF2630 0.41 +1.3 224,132 - GFF2630 0.41 +0.2 224,159 - GFF2630 0.43 +0.2 224,159 - GFF2630 0.43 -0.4 224,159 - GFF2630 0.43 -1.3 224,189 + GFF2630 0.45 -0.2 224,189 + GFF2630 0.45 -1.0 224,266 + GFF2630 0.50 -1.0 224,266 + GFF2630 0.50 -2.1 224,286 + GFF2630 0.51 -0.9 224,286 + GFF2630 0.51 +0.1 224,286 + GFF2630 0.51 -0.5 224,286 + GFF2630 0.51 -0.3 224,286 + GFF2630 0.51 -0.0 224,286 + GFF2630 0.51 -0.9 224,286 + GFF2630 0.51 +0.0 224,287 - GFF2630 0.51 +0.1 224,287 - GFF2630 0.51 +0.0 224,287 - GFF2630 0.51 +0.4 224,287 - GFF2630 0.51 +0.1 224,308 + GFF2630 0.52 -0.5 224,308 + GFF2630 0.52 -0.5 224,308 + GFF2630 0.52 -0.2 224,308 + GFF2630 0.52 +0.3 224,309 - GFF2630 0.52 -0.2 224,401 + GFF2630 0.58 -0.1 224,401 + GFF2630 0.58 -0.3 224,402 - GFF2630 0.58 -1.2 224,402 - GFF2630 0.58 -0.1 224,481 + GFF2630 0.63 +0.2 224,481 + GFF2630 0.63 -1.4 224,481 + GFF2630 0.63 -0.3 224,524 + GFF2630 0.66 -0.4 224,524 + GFF2630 0.66 +0.3 224,524 + GFF2630 0.66 -0.6 224,524 + GFF2630 0.66 -1.8 224,524 + GFF2630 0.66 -0.5 224,525 - GFF2630 0.66 +1.1 224,525 - GFF2630 0.66 +0.8 224,525 - GFF2630 0.66 -0.7 224,525 - GFF2630 0.66 -1.0 224,575 + GFF2630 0.69 -1.3 224,575 + GFF2630 0.69 +0.1 224,576 - GFF2630 0.69 -0.2 224,608 + GFF2630 0.72 +0.3 224,608 + GFF2630 0.72 -0.2 224,609 - GFF2630 0.72 -0.1 224,619 + GFF2630 0.72 -0.3 224,626 + GFF2630 0.73 -0.4 224,626 + GFF2630 0.73 +1.1 224,626 + GFF2630 0.73 -0.3 224,626 + GFF2630 0.73 +1.1 224,626 + GFF2630 0.73 +0.6 224,626 + GFF2630 0.73 -1.0 224,626 + GFF2630 0.73 +0.2 224,626 + GFF2630 0.73 -0.3 224,627 - GFF2630 0.73 +0.7 224,627 - GFF2630 0.73 +0.3 224,627 - GFF2630 0.73 -0.9 224,627 - GFF2630 0.73 +0.4 224,627 - GFF2630 0.73 -0.5 224,627 - GFF2630 0.73 -0.6 224,627 - GFF2630 0.73 +0.9 224,735 + GFF2630 0.80 -0.1 224,736 + GFF2630 0.80 -0.9 224,736 - GFF2630 0.80 -0.6 224,736 - GFF2630 0.80 -1.0 224,736 - GFF2630 0.80 -0.3 224,884 + GFF2630 0.89 -0.0 224,884 + GFF2630 0.89 -0.1 224,884 + GFF2630 0.89 +0.4 224,884 + GFF2630 0.89 +1.5 224,884 - GFF2630 0.89 +0.0 224,885 - GFF2630 0.89 -0.8 224,885 - GFF2630 0.89 +1.3 224,905 + -0.5 224,905 + -1.5 224,905 + +0.3 224,906 - -0.2 224,906 - -0.1 224,906 - +0.6 224,906 - -0.3 224,906 - -0.2 224,906 - +0.0 224,906 - +0.8 224,906 - -1.3 224,906 - -0.6 224,906 - -1.5 224,906 - +0.2 224,906 - -1.0 225,125 + -0.7 225,126 - +0.5 225,126 - +0.1 225,126 - +0.8 225,126 - -1.1 225,178 - +0.0 225,187 - -1.1 225,261 + +0.4 225,262 - -1.0 225,262 - -0.7 225,262 - +0.0 225,348 - GFF2631 0.13 -0.4 225,358 - GFF2631 0.14 -0.1 225,515 - GFF2631 0.29 +0.1 225,569 + GFF2631 0.34 -0.1 225,569 + GFF2631 0.34 -0.3 225,590 + GFF2631 0.36 +0.3 225,591 - GFF2631 0.36 +0.6 225,600 + GFF2631 0.37 +0.1 225,601 - GFF2631 0.37 +0.6 225,601 - GFF2631 0.37 +0.1 225,606 + GFF2631 0.37 -0.8 225,606 + GFF2631 0.37 +0.0 225,607 - GFF2631 0.37 -1.7 225,607 - GFF2631 0.37 -1.7 225,609 + GFF2631 0.38 +0.0 225,610 - GFF2631 0.38 -0.7 225,622 + GFF2631 0.39 -0.3 225,622 + GFF2631 0.39 +0.2 225,622 + GFF2631 0.39 +0.3 225,623 - GFF2631 0.39 -0.6 225,680 - GFF2631 0.44 -0.1 225,698 + GFF2631 0.46 -1.7 225,699 - GFF2631 0.46 +0.0 225,699 - GFF2631 0.46 -0.6 225,741 + GFF2631 0.50 -0.3 225,753 + GFF2631 0.51 -0.3 225,753 + GFF2631 0.51 -1.5 225,753 + GFF2631 0.51 -0.5 225,753 + GFF2631 0.51 -0.1 225,753 + GFF2631 0.51 -0.8 225,754 - GFF2631 0.51 -0.3 225,754 - GFF2631 0.51 -0.5 225,806 + GFF2631 0.56 -0.4 225,807 - GFF2631 0.56 -0.4 225,807 - GFF2631 0.56 -0.8 225,807 - GFF2631 0.56 -1.4 225,810 + GFF2631 0.56 -0.7 225,812 + GFF2631 0.57 +0.6 225,812 + GFF2631 0.57 -0.2 225,812 + GFF2631 0.57 -0.7 225,812 + GFF2631 0.57 -1.0 225,812 + GFF2631 0.57 -0.5 225,812 + GFF2631 0.57 +0.0 225,812 + GFF2631 0.57 +0.3 225,812 + GFF2631 0.57 +0.0 225,813 - GFF2631 0.57 -0.4 225,813 - GFF2631 0.57 +0.6 225,813 - GFF2631 0.57 -1.9 225,813 - GFF2631 0.57 -0.1 225,813 - GFF2631 0.57 -0.6 225,813 - GFF2631 0.57 -0.2 225,813 - GFF2631 0.57 -0.7 225,813 - GFF2631 0.57 +0.2 225,813 - GFF2631 0.57 -0.5 225,825 + GFF2631 0.58 +0.9 225,826 - GFF2631 0.58 -0.4 225,936 + GFF2631 0.68 -0.1 225,936 + GFF2631 0.68 -1.0 225,937 - GFF2631 0.68 +1.9 225,937 - GFF2631 0.68 -0.4 225,937 - GFF2631 0.68 -0.5 225,937 - GFF2631 0.68 +0.3 225,975 + GFF2631 0.72 -1.5 225,975 + GFF2631 0.72 +0.6 225,975 + GFF2631 0.72 -0.5 225,975 + GFF2631 0.72 -0.5 225,976 - GFF2631 0.72 -0.4 225,976 - GFF2631 0.72 -0.2 225,976 - GFF2631 0.72 +0.2 225,996 + GFF2631 0.74 +0.8 225,996 + GFF2631 0.74 +1.3 225,996 + GFF2631 0.74 +0.3 225,996 + GFF2631 0.74 -0.3 225,997 - GFF2631 0.74 -0.8 225,997 - GFF2631 0.74 +0.3
Or see this region's nucleotide sequence